PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10029776m

Common Name

CICLE_v10029776mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 64aa MW: 7242.39 Da PI: 11.0568

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10029776m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.2	1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCdaeva+i+fs+tg+l++yss Ciclev10029776m 9 KKIDNPTARQVTFSKRRRGLFKKAQELSTLCDAEVALIVFSTTGRLFDYSS 59 68***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.73	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.9E-39	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-28	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-27	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.10E-34	3	62	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 64 aa Download sequence Send to blast
MTRQKIEIKK IDNPTARQVT FSKRRRGLFK KAQELSTLCD AEVALIVFST TGRLFDYSSS 60 RFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-18	1	60	1	60	MEF2C
5f28_B	3e-18	1	60	1	60	MEF2C
5f28_C	3e-18	1	60	1	60	MEF2C
5f28_D	3e-18	1	60	1	60	MEF2C
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006423752.2	4e-37	MADS-box protein JOINTLESS isoform X4
Refseq	XP_006487504.1	4e-37	MADS-box protein JOINTLESS-like isoform X3
Refseq	XP_015388512.1	4e-37	MADS-box protein JOINTLESS-like isoform X4
Refseq	XP_024035082.1	4e-37	MADS-box protein JOINTLESS isoform X3
Swissprot	Q9FUY6	9e-30	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	V4SDT3	7e-38	V4SDT3_9ROSI; Uncharacterized protein
STRING	XP_006423754.1	1e-38	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	3e-30	AGAMOUS-like 24

Link Out ? help Back to Top
Phytozome	Ciclev10029776m
Entrez Gene	18033853

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]