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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10028930m | ||||||||
Common Name | CICLE_v10028930mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 33549.7 Da PI: 7.9049 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 150 | 199 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f taeeAa+a+++a+ +++g Ciclev10028930m 150 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEEAARAYDKAAVEFRG 199 59*******.**********82....48***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.53E-32 | 149 | 207 | No hit | No description |
SMART | SM00380 | 4.7E-38 | 150 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 150 | 208 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-33 | 150 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.277 | 150 | 207 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-14 | 150 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-12 | 151 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-12 | 173 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MQRSSKRQRF CAVSAAHNPP PSPPPRRLTQ EQELAIMVAA LENVVVGNTD NDFSTDIFRF 60 QDWTASNAAA IASTSTSYNN HNTNFGNAML PPADTCQVCN IQGCLGCNYF PPNNNHYPHQ 120 QQQPQQQQHQ RQKKAAAGSS GAGKRRGKKN YRGVRQRPWG KWAAEIRDPR RATRVWLGTF 180 NTAEEAARAY DKAAVEFRGP RAKLNFPFPD STTVATAYEQ QQQGESSHSQ QPQQVVSQDS 240 NQSVARTNNN NGNSAAATEA MGDQIQSDFW EMIGEDEIQQ WMTMMDFGTD SSDSANTATG 300 LTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-22 | 138 | 207 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.20655 | 0.0 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR492042 | 2e-75 | KR492042.1 UNVERIFIED: Citrus sinensis clone 151-4g mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423025.1 | 0.0 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | V4SBR5 | 0.0 | V4SBR5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423025.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5469 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 8e-32 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10028930m |
Entrez Gene | 18035271 |