PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10028435m | ||||||||
Common Name | CICLE_v10028435mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bZIP | ||||||||
Protein Properties | Length: 449aa MW: 48559.4 Da PI: 10.1758 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.9 | 9.4e-13 | 369 | 412 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L + Ciclev10028435m 369 RRHRRMIKNRESAARSRARKQAYTLELEAEVAKLKELNQELERK 412 699************************************99632 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.0E-9 | 365 | 428 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.358 | 367 | 412 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.3E-11 | 369 | 417 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.2E-12 | 369 | 414 | No hit | No description |
CDD | cd14707 | 3.35E-24 | 369 | 415 | No hit | No description |
SuperFamily | SSF57959 | 7.03E-9 | 369 | 413 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 372 | 387 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MGSQMNYKNV GDTSYGDGKQ AGNFPLARQP SVYSLTFEEF QNTWGGLGKD FGSMNMDELL 60 KNIWTAEESH AMNSSAGAAG ESNAPGGNLQ RQGSLTLPRT LSQKTVDEVW RDLMKEGSGG 120 AAAGGGGGSN VPQRQQTLGE MTLEEFLVRA GVVREDAQQI GGSLNNAGFY ANNNTSLALG 180 FQQPSRNNGL IGNRIMEDGS SVPSQPPSLA LNVNGIRSSQ QPQQQPQQHQ YQLQQQQQPQ 240 LQQHPYQQQQ RQQQQAPLFP KQATVAFASP MNLVNTTQLS SPGARGQVVT VTNSSMNGNL 300 VQAGGLQGGG MGMVGLGAGG VTLATGSQVA QVSPDMIAKS TADVSSPSPV PYVFGRGRKS 360 GALEKVVERR HRRMIKNRES AARSRARKQA YTLELEAEVA KLKELNQELE RKQAEKIEME 420 KNKQIIEKMK YRWGGKILCL RRTLTGPW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.1293 | 0.0 | fruit| vegetative tissue |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:11884679}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00038 | PBM | Transfer from AT4G34000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:16284313}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM171703 | 0.0 | HM171703.1 Citrus trifoliata ABA responsive element binding factor (ABF) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423013.1 | 0.0 | bZIP transcription factor TRAB1 isoform X1 | ||||
Swissprot | Q9M7Q3 | 1e-119 | AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
TrEMBL | A0A067EX59 | 0.0 | A0A067EX59_CITSI; Uncharacterized protein | ||||
TrEMBL | V4RPE6 | 0.0 | V4RPE6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423013.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34000.2 | 6e-94 | abscisic acid responsive elements-binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10028435m |
Entrez Gene | 18033660 |