PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024061m
Common NameCICLE_v10024061mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 316aa    MW: 35162.3 Da    PI: 5.9937
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024061mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.67e-30139195358
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+ dp v++itY  eHnh
  Ciclev10024061m 139 DKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSSADPGVFIITYGAEHNH 195
                      99************************998**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-29124198IPR003657WRKY domain
PROSITE profilePS5081131.984132198IPR003657WRKY domain
SuperFamilySSF1182903.14E-25136198IPR003657WRKY domain
SMARTSM007747.3E-35137197IPR003657WRKY domain
PfamPF031065.7E-25139195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
PILTRDFVCM DWDLQAIVRG CSTEASIDSV MDKPQSYNFS PSSLQQDVRF KFPDVSETTT  60
ILDELEELYK PFYPQTILTS TSISAPTEVN KKPKKLRKQQ RKLSDSASNT DHPAAQPKGG  120
KNQHKRVVQR VTADCLACDK WAWRKYGQKP IKGSPYPRSY YRCSSSKGCL ARKQVERSSA  180
DPGVFIITYG AEHNHGHPTR RSALAGSTRS KLASMSKAQG PAQKEPFEPA SEASAELGDL  240
VYQGNIKKED ENAFKDGQEN ELVMPDLTFG DELMFPSLED LEGFLLDQFP DHNINISADD  300
NSWFIDESVT LNGGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-18127198474WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439465.20.0WRKY transcription factor 22 isoform X2
TrEMBLV4TM450.0V4TM45_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006439465.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-38WRKY family protein