PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10023593m | ||||||||
Common Name | CICLE_v10023593mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22773.2 Da PI: 6.7894 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5.2e-12 | 113 | 155 | 1 | 46 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 s+y+GVr ++ +g+W eI+ p++n +++++lg+f+ +e+A a+ Ciclev10023593m 113 SKYRGVRPRP-WGKWTGEIKNPNKN--TAQVWLGTFDMPEDAGSAY 155 89*****999.********999665..5*************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.18E-23 | 113 | 174 | No hit | No description |
SuperFamily | SSF54171 | 6.15E-18 | 113 | 173 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-7 | 113 | 155 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.086 | 114 | 172 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-23 | 114 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-23 | 114 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MTGGVGRKRE ESSSFLKIAF IQFLENLCRF NHHNLKLHFS LQFKSLNSNS NIQQQILDQS 60 MAASAGNSSS TETVNSCLEL ISSSNPLDDL FDQPDYESEP TTPDTIRQKA VRSKYRGVRP 120 RPWGKWTGEI KNPNKNTAQV WLGTFDMPED AGSAYGPAPF QIHGQNAELN FPQTRESHEE 180 KHFRESACAN TYSGSILFSN PLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 115 | 172 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015386027.1 | 2e-89 | ethylene-responsive transcription factor 13-like | ||||
Refseq | XP_015386028.1 | 2e-89 | ethylene-responsive transcription factor 13-like | ||||
Refseq | XP_024043251.1 | 2e-89 | ethylene-responsive transcription factor 13 | ||||
TrEMBL | V4U216 | 1e-150 | V4U216_9ROSI; Uncharacterized protein | ||||
STRING | XP_006442921.1 | 1e-151 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM33160 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 1e-23 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10023593m |
Entrez Gene | 18049431 |