PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021117m
Common NameCICLE_v10021117mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 328aa    MW: 36926.7 Da    PI: 8.3696
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021117mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.13e-52181431129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhP+d+elv++yL kkv++++ ++   ++ vd++k+ePwd+p+++  + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd+++l+
  Ciclev10021117m  18 LPPGFRFHPRDDELVCDYLMKKVTHTNESI--LLAAVDLNKCEPWDIPETACVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRAILR 109
                      79**********************999666..79**************7777799**************************************9 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       kg+lvg++ktLvfy+grapkg+kt+Wvmhe+rle
  Ciclev10021117m 110 -KGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLE 143
                      .999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-5910170IPR003441NAC domain
PROSITE profilePS5100555.7518170IPR003441NAC domain
PfamPF023655.7E-2719142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSSSNNSNNN IRMVEAQLPP GFRFHPRDDE LVCDYLMKKV THTNESILLA AVDLNKCEPW  60
DIPETACVGG KEWYFYSQRD RKYATGLRTN RATASGYWKA TGKDRAILRK GSLVGMRKTL  120
VFYRGRAPKG KKTEWVMHEF RLEGPFANSP KASSLKYVQE DWVLCRVFYK KREVPGQQSM  180
GSCSYDDTGS SSLPPLMDSY ITFNQTLPNF QDNYNELVSC FSILSSSQQD QIITNNPIFT  240
HFNHSEPNNI ISTKNSTTFG KNIPVGTDCL DPVACDKKVI KAVLNQLTKI ESNVPNMQGS  300
SPSLGEPSPD SYLSEVGMPT NMWNHHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-521417311171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441024.10.0NAC domain-containing protein 21/22
SwissprotQ84TE61e-114NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLV4VN310.0V4VN31_9ROSI; Uncharacterized protein
STRINGXP_006441024.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-113NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]