PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020989m
Common NameCICLE_v10019956mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 342aa    MW: 37332.6 Da    PI: 6.5893
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020989mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like110.39.9e-35258312155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+
  Ciclev10020989m 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.061255315IPR017930Myb domain
SuperFamilySSF466892.33E-18256312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-32256314IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-25258312IPR006447Myb domain, plants
PfamPF002492.8E-10260311IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEARPLSIQR SSARQLNNLG VSGPMSSSLP VLPTPLEDTF SKLPNSQQVY MEQELRTRPL  60
APAPHIPANS GVVGHIFSSS SGLSSDLQYS SASPHEKLPR TTSFISQSST PIPQTSHSGL  120
PQSSTSSHYT KESSSSWCPE SLPGYVDFAA NTPVQNSQME GSSCSGAIVS EEFSKRNDWH  180
EWADQLITDD DPLGSSWNEI LADTSMTEME PKMSYQVPKT PTSMPAHRTQ VHQQLPASST  240
EIRTVVTPSA SANNAPAKPR MRWTPELHEA FVEAVNQLGG SERATPKGVL KLMKVEGLTI  300
YHVKSHLQKY RTARYRPDSS EGSSEKRLTP LEEISSLDLK T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443756.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_006443759.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_006443760.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_015386209.10.0protein PHOSPHATE STARVATION RESPONSE 1
RefseqXP_024043818.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
TrEMBLV4T9L40.0V4T9L4_9ROSI; Uncharacterized protein
STRINGXP_006479465.10.0(Citrus sinensis)
STRINGXP_006443756.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.15e-77phosphate starvation response 1