PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10019533m

Common Name

CICLE_v10019533mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 534aa MW: 60199.3 Da PI: 6.7238

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10019533m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.2	8.2e-33	8	107	30	127
NAM 30 leevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektd 120 + ++i++v d++k+ePw+Lp+ ++ +e++ wyfF kya++kr nr+t+sg+Wk+t kd+e+ +++g+++glkk Lvf++gr p+g +t+ Ciclev10019533m 8 A-HTIADVvDVCKYEPWELPQrsSMPKEDRVWYFFNAPVPKYANSKRINRTTNSGFWKSTCKDREIWDERGKKIGLKKNLVFHEGRVPNGIRTK 100 4.3455555********95346667899************************************************************ PP NAM 121 Wvmheyr 127 Wvmhey+ Ciclev10019533m 101 WVMHEYH 107 ****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.783	1	126	IPR003441	NAC domain
SuperFamily	SSF101941	6.93E-33	3	126	IPR003441	NAC domain
Pfam	PF02365	8.6E-12	26	107	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MCGLDFPAHT IADVVDVCKY EPWELPQRSS MPKEDRVWYF FNAPVPKYAN SKRINRTTNS 60 GFWKSTCKDR EIWDERGKKI GLKKNLVFHE GRVPNGIRTK WVMHEYHSLN ASSYPKEFVL 120 FRLKKKSGAK PDARNEPTPQ DLAFDSGNRA IENTNPQINR GLPEEWQLFL SDTELDYNLL 180 ADSNGFHDNT FSELPPNIQP ERGTSINSSV FDRILQPMVQ PERGTSINSS VFDRILQPMV 240 QPEHGTSYSD GFNNEPSFLN DSCLETSEQE EAFVNSLWAD QGECFGERSM NTLRHDFNPT 300 ISLRGGRSIG QSSDADSKIY QQHGKVPGTS NVFYEKTHAQ METVWALSET SSSSEGYGIM 360 DFDVSSVNSD TDLPGIVGHE SVVDELQHTP KYHKYFEARC STQELKTQRK VSDKAVSKVE 420 MGEAVHHAVD LPRTEKATMR LVKDKKMAQK TRERKDSNSS SNGSTSSSKK KLYISSLTAA 480 SDGAGSSNQR RSFISLEIPQ LSHKTDPPSV YLLNVLVSLV LVIFIIREMA YLH*

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MCGLDFPAHT IADVVDVCKY EPWELPQRSS MPKEDRVWYF FNAPVPKYAN SKRINRTTNS  60
GFWKSTCKDR EIWDERGKKI GLKKNLVFHE GRVPNGIRTK WVMHEYHSLN ASSYPKEFVL  120
FRLKKKSGAK PDARNEPTPQ DLAFDSGNRA IENTNPQINR GLPEEWQLFL SDTELDYNLL  180
ADSNGFHDNT FSELPPNIQP ERGTSINSSV FDRILQPMVQ PERGTSINSS VFDRILQPMV  240
QPEHGTSYSD GFNNEPSFLN DSCLETSEQE EAFVNSLWAD QGECFGERSM NTLRHDFNPT  300
ISLRGGRSIG QSSDADSKIY QQHGKVPGTS NVFYEKTHAQ METVWALSET SSSSEGYGIM  360
DFDVSSVNSD TDLPGIVGHE SVVDELQHTP KYHKYFEARC STQELKTQRK VSDKAVSKVE  420
MGEAVHHAVD LPRTEKATMR LVKDKKMAQK TRERKDSNSS SNGSTSSSKK KLYISSLTAA  480
SDGAGSSNQR RSFISLEIPQ LSHKTDPPSV YLLNVLVSLV LVIFIIREMA YLH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-23	2	126	40	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-23	2	126	40	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-23	2	126	40	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-23	2	126	40	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-23	2	126	43	168	NAC domain-containing protein 19
3swm_B	5e-23	2	126	43	168	NAC domain-containing protein 19
3swm_C	5e-23	2	126	43	168	NAC domain-containing protein 19
3swm_D	5e-23	2	126	43	168	NAC domain-containing protein 19
3swp_A	5e-23	2	126	43	168	NAC domain-containing protein 19
3swp_B	5e-23	2	126	43	168	NAC domain-containing protein 19
3swp_C	5e-23	2	126	43	168	NAC domain-containing protein 19
3swp_D	5e-23	2	126	43	168	NAC domain-containing protein 19
4dul_A	4e-23	2	126	40	165	NAC domain-containing protein 19
4dul_B	4e-23	2	126	40	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444690.2	0.0	uncharacterized protein LOC18047065
Refseq	XP_024044984.1	0.0	uncharacterized protein LOC18047065
TrEMBL	V4U1K6	0.0	V4U1K6_9ROSI; Uncharacterized protein
STRING	XP_006444690.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17987	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	2e-29	NAC domain containing protein 50

Link Out ? help Back to Top
Phytozome	Ciclev10019533m
Entrez Gene	18047065