PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TALE

Protein Properties

Length: 385aa MW: 42988.3 Da PI: 6.4023

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10015581m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.4	2.1e-07	309	344	21	55
HSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsae.ereeLAkklgLterqVkvWFqNrRake 55 k +yps+e ++ LA+++gL+ +q+ +WF N+R ++ Ciclev10015581m 309 KWPYPSQEsQKLALAESTGLDSKQINNWFINQRKRH 344 5689987626779********************885 PP
2	ELK	37.4	5.5e-13	263	284	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlr Ysg+L+sLkqEF+ Ciclev10015581m 263 ELKGQLLRRYSGCLSSLKQEFM 284 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.8E-19	127	171	IPR005540	KNOX1
Pfam	PF03790	4.3E-21	129	167	IPR005540	KNOX1
SMART	SM01256	8.5E-27	176	227	IPR005541	KNOX2
Pfam	PF03791	1.3E-22	179	225	IPR005541	KNOX2
Pfam	PF03789	2.1E-10	263	284	IPR005539	ELK domain
PROSITE profile	PS51213	10.423	263	283	IPR005539	ELK domain
SMART	SM01188	8.6E-8	263	284	IPR005539	ELK domain
PROSITE profile	PS50071	10.349	283	347	IPR001356	Homeobox domain
SMART	SM00389	2.8E-8	285	351	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.8E-16	285	358	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-26	288	350	IPR009057	Homeodomain-like
CDD	cd00086	1.56E-10	295	348	No hit	No description
Pfam	PF05920	8.9E-15	303	343	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	322	345	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDGGSNSTSC MNMMAFGDNS NGLYCPMMMM PLMSSFTHQH HRHDHHHDEH HQHHLDADSN 60 TLFLPLAAAA TTTINNIVPN QNRNSSSGSS LILEDNTTAT ATAINTINNS SARCYFMETN 120 YGSGASSSVK AKIMAHPHYH RLLAAYANCQ KVGAPPEVVA RLEEVCASAA SMGSGGSSCI 180 GQDPALDQFM EAYCEMLTKY EQELSKPFKE AMSFLQKIES QFKSLSISSP NSASSEAIDR 240 NGSSEEDFDV NIDFIDPQAE DQELKGQLLR RYSGCLSSLK QEFMKKRKKG KLPKEARQQL 300 LDWWSKHYKW PYPSQESQKL ALAESTGLDS KQINNWFINQ RKRHWKPSED MQFMVMDATQ 360 PQYYIDSTVM GNPFPMDLSP APLL*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDGGSNSTSC MNMMAFGDNS NGLYCPMMMM PLMSSFTHQH HRHDHHHDEH HQHHLDADSN  60
TLFLPLAAAA TTTINNIVPN QNRNSSSGSS LILEDNTTAT ATAINTINNS SARCYFMETN  120
YGSGASSSVK AKIMAHPHYH RLLAAYANCQ KVGAPPEVVA RLEEVCASAA SMGSGGSSCI  180
GQDPALDQFM EAYCEMLTKY EQELSKPFKE AMSFLQKIES QFKSLSISSP NSASSEAIDR  240
NGSSEEDFDV NIDFIDPQAE DQELKGQLLR RYSGCLSSLK QEFMKKRKKG KLPKEARQQL  300
LDWWSKHYKW PYPSQESQKL ALAESTGLDS KQINNWFINQ RKRHWKPSED MQFMVMDATQ  360
PQYYIDSTVM GNPFPMDLSP APLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	287	LKQEFMKKRK
2	284	288	KKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
Uniprot	TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449809.1	0.0	homeobox protein SHOOT MERISTEMLESS isoform X1
Swissprot	P46608	1e-147	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	V4W9S0	0.0	V4W9S0_9ROSI; Uncharacterized protein
STRING	XP_006449809.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6473	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-124	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	Ciclev10015581m
Entrez Gene	18050945

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]