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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10013766m | ||||||||
Common Name | CICLE_v10013766mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 20451 Da PI: 8.4779 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.7e-18 | 27 | 77 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + ykGVr+ ++g+Wv+e+r+p +k+ r++lg+f ++++Aa+a++aa+++l+g+ Ciclev10013766m 27 PVYKGVRR--RNGKWVCELREP---NKKSRIWLGTFASPDKAARAYDAAALALRGN 77 68****85..47*********8...347*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.5E-13 | 27 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-19 | 28 | 85 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-28 | 28 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.968 | 28 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-28 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-7 | 29 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.29E-13 | 29 | 86 | No hit | No description |
PRINTS | PR00367 | 3.2E-7 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MDNTAQKSST AQKRKAGRKK FQETRHPVYK GVRRRNGKWV CELREPNKKS RIWLGTFASP 60 DKAARAYDAA ALALRGNSAS LNFPEAAGAL RRAKSDDVRD IQCAAMEAAE KLSSPSSSKP 120 CMESNSENVQ DSRREFVDEE EMFNMPGIID GMAEALILTP PAMKSGFKWD DLDETVEFTL 180 WSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-14 | 26 | 85 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430282.1 | 1e-134 | dehydration-responsive element-binding protein 1D | ||||
TrEMBL | V4SS19 | 1e-132 | V4SS19_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430282.1 | 1e-133 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM355 | 28 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 9e-36 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10013766m |
Entrez Gene | 18039504 |