PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010485m
Common NameCICLE_v10010485mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 71aa    MW: 7789.01 Da    PI: 10.4768
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010485mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.21.8e-07948145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     k+ie +  r vtfskRr+     AeE    ++ ++ v++fss g+
  Ciclev10010485m  9 KKIEKQKARMVTFSKRRQ-----AEEYANITGSQITVLVFSSAGN 48
                     689**************7.....9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-11155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.409156IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-14268IPR002100Transcription factor, MADS-box
PfamPF003194.5E-101050IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MGKLKIEIKK IEKQKARMVT FSKRRQAEEY ANITGSQITV LVFSSAGNPY VHGSPSFDAV  60
IDKFLSVNGG A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442526.11e-39agamous-like MADS-box protein AGL29
RefseqXP_015388040.19e-40agamous-like MADS-box protein AGL61
TrEMBLV4TWB72e-44V4TWB7_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006451633.13e-45(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2014436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-10AGAMOUS-like 61