PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 212aa MW: 24364.9 Da PI: 8.6081

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10009472m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.7	4.8e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRrng++KKA EL +LCda+v+++i sst k +ey+s Ciclev10009472m 9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59 79***********************************************86 PP
2	K-box	77.1	4.5e-26	71	166	1	96
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yqk+ ++l+++++e++ ++l +++ ++ L++++R+++Ge+L++L+l+eL Leq++ ++lk iR+ K+++l +qi++ ++k + +q+enk+L Ciclev10009472m 71 YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIRECKDQVLARQINTFKRKVRGVQKENKSL 164 78888889************************************************************************************** PP K-box 95 rk 96 + Ciclev10009472m 165 QD 166 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.614	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.4E-37	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.22E-32	2	90	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.40E-37	2	80	No hit	No description
PRINTS	PR00404	1.1E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-22	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-25	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	5.9E-19	82	166	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.827	84	176	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MGRGKMEMKR IENATNRQVT FSKRRNGLFK KARELTILCD AKVSILICSS TAKAHEYISP 60 STTTKQLLDL YQKTLRVDLW SSHYEKMLEN LGAVEQVNRI LKKQIRQRMG ESLNDLTLEE 120 LTGLEQDILD GLKIIRECKD QVLARQINTF KRKVRGVQKE NKSLQDGFMI NAKEEDPHYE 180 YELVDNGEHC DSDFGFQNEG PGIFALRLQP N*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269\|PubMed:17920788}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB218614	0.0	AB218614.1 Citrus unshiu CitMADS8 mRNA for MADS-box protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006453002.1	1e-157	floral homeotic protein PMADS 1
Swissprot	E0CPH4	4e-84	AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBL	V4UJC6	1e-155	V4UJC6_9ROSI; Uncharacterized protein
STRING	XP_006474489.1	1e-154	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	1e-68	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Ciclev10009472m
Entrez Gene	18055307

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]