PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008628m
Common NameCICLE_v10008628mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 383aa    MW: 42297.2 Da    PI: 8.6204
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008628mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.82.5e-54161431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s
  Ciclev10008628m  16 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-SIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVMS 108
                      79****************************.89***************988899**************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  Ciclev10008628m 109 SgSNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 143
                      977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-6512177IPR003441NAC domain
PROSITE profilePS5100562.28516177IPR003441NAC domain
PfamPF023654.7E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MESADSSTGG SPQPNLPPGF RFHPTDEELV VHYLKKKASS APLPVSIIAE VDLYKFDPWE  60
LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVMSSG SNQKVGVKKA  120
LVFYGGKPPK GIKTNWIMHE YRLTDNKVSN KPPGCDLGNK KNSLRLDDWV LCRIYKKNNL  180
HRPLMDHDKD DSMDDMLGVH IPPSLMISSQ QQNTNLKLHM PTRGANLNSF GALLVNEPNF  240
FEGLTSHDGI NNNSSNNNNG SISSHHHHQF AASSSSKLQV QAMDSLKRTL PSSSWTDHED  300
VPSGGALVNK RFHGENNVND DQSIEGRTDH HGNGSSSIAT LLSQLPQTPP PPSIHQQAIL  360
GSLGDGIFRQ PYHQLPGMNW YS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-741517914170Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288DSLKRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.20810.0flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.
UniprotTISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451941.10.0NAC transcription factor 56
RefseqXP_006464707.10.0NAC transcription factor 56
SwissprotQ9LD441e-125NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A067GFE80.0A0A067GFE8_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q3Q90.0A0A2H5Q3Q9_CITUN; Uncharacterized protein
TrEMBLV4URT40.0V4URT4_9ROSI; Uncharacterized protein
STRINGXP_006464707.10.0(Citrus sinensis)
STRINGXP_006451941.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-114NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]