PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008116m
Common NameCICLE_v10008116mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 490aa    MW: 54881.1 Da    PI: 4.458
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008116mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-341292202102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye++ed+e++ ++sws n nsf+v+++++f++++LpkyFkh+nf+SF+RQLn+YgFkk+++++         weF++++F+ gkk+ll+
  Ciclev10008116m 129 FLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNR---------WEFANEKFRGGKKHLLK 213
                      9********************999****************************************9998.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+++
  Ciclev10008116m 214 NIKRRSR 220
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-52125218IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.86E-32125218IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-36125218IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.5E-18129152IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-30129218IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-18167179IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340168192IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-18180192IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MVIPTAVAGG AGGTFCSVCS SNLFPKPKSC QDVAMETIEE TVETENKIPL ITVKEDEEEE  60
KEASTYENSN GGGPSSSSSS MPTLPRIKEE EEEEEEEEEE EGAFDDELVG GGSLPKPMEG  120
LNEVGPPPFL RKIYEMVEDP ETDPVVSWSL NRNSFIVWES HDFSENLLPK YFKHKNFSSF  180
IRQLNTYGFK KIHSNRWEFA NEKFRGGKKH LLKNIKRRSR FNKAQDGTVT LACVDSAKFG  240
VEMELETLRN DQKTLRLEML KLRQQQDESL CQMSAVAERI RCAECKQQQM LNFFAKIAKY  300
PNFVQQLVHK RKQQRELHGD EFKLSKKPRL TATQLESQSV PESVDSSENV NCRNQAREQL  360
ATMQSELTDM LPADSTNIDT TDTPPAFQAL MDDDGLCRSP IQDLKGNVMC TCGNGTTITA  420
QDSSSVYNTF LGNVLGDSSI TENGTDDDQV AVSDSQLFHE LEDLIGKSHS WGGYVNELAE  480
QIDHVFTDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B3e-221292184104Putative transcription factor
5d5x_B3e-221292184104Putative transcription factor
5d5x_E3e-221292184104Putative transcription factor
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211217LKNIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033340.10.0heat shock factor protein HSF30
TrEMBLV4TW030.0V4TW03_9ROSI; Uncharacterized protein
STRINGXP_006451498.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-82heat shock transcription factor A2