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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10007068m | ||||||||
Common Name | CICLE_v10007068mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23953.8 Da PI: 4.9271 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9e-19 | 45 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+e+r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g Ciclev10007068m 45 PVYRGVRRRD-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 95 68*****999.7******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-14 | 45 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-21 | 46 | 105 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-31 | 46 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-32 | 46 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.629 | 46 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-9 | 47 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.13E-30 | 47 | 105 | No hit | No description |
PRINTS | PR00367 | 3.6E-9 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDSLSSWSSP ESRVGNFSDE DVVLLASSNP KKRAGRKKFR ETRHPVYRGV RRRDSGKWVC 60 EVREPNKKSR IWLGTFPTAE MAARAHDVAA IALRGRLACL NFADSSWRLP LPASTDPKDI 120 QKAAAEAAEA FRPEKDLRRG DDKMDEEEAA ERTTMSDDVF FMDEEAVFGM PRLLTNMAEG 180 MLLPPPPPPQ SNCGGYEEDD VESNADVSLW SYSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-15 | 44 | 102 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ861084 | 0.0 | FJ861084.1 Citrus sinensis CRT/DRE binding factor (cbf) gene, promoter region and complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006421846.1 | 1e-156 | dehydration-responsive element-binding protein 1D | ||||
Refseq | XP_006490321.1 | 1e-156 | dehydration-responsive element-binding protein 1D | ||||
Swissprot | Q9FJ93 | 3e-79 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A067F1X4 | 1e-155 | A0A067F1X4_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NM48 | 1e-155 | A0A2H5NM48_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SDL3 | 1e-155 | V4SDL3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006490321.1 | 1e-155 | (Citrus sinensis) | ||||
STRING | XP_006421846.1 | 1e-155 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM355 | 28 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 2e-74 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10007068m |
Entrez Gene | 18033409 |
Publications ? help Back to Top | |||
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