PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007068m
Common NameCICLE_v10007068mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 215aa    MW: 23953.8 Da    PI: 4.9271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007068mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-194595155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  Ciclev10007068m 45 PVYRGVRRRD-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 95
                     68*****999.7******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-144595IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2146105IPR016177DNA-binding domain
SMARTSM003802.9E-3146109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-3246105IPR001471AP2/ERF domain
PROSITE profilePS5103222.62946103IPR001471AP2/ERF domain
PRINTSPR003673.6E-94758IPR001471AP2/ERF domain
CDDcd000182.13E-3047105No hitNo description
PRINTSPR003673.6E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDSLSSWSSP ESRVGNFSDE DVVLLASSNP KKRAGRKKFR ETRHPVYRGV RRRDSGKWVC  60
EVREPNKKSR IWLGTFPTAE MAARAHDVAA IALRGRLACL NFADSSWRLP LPASTDPKDI  120
QKAAAEAAEA FRPEKDLRRG DDKMDEEEAA ERTTMSDDVF FMDEEAVFGM PRLLTNMAEG  180
MLLPPPPPPQ SNCGGYEEDD VESNADVSLW SYSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-15441021271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8610840.0FJ861084.1 Citrus sinensis CRT/DRE binding factor (cbf) gene, promoter region and complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421846.11e-156dehydration-responsive element-binding protein 1D
RefseqXP_006490321.11e-156dehydration-responsive element-binding protein 1D
SwissprotQ9FJ933e-79DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A067F1X41e-155A0A067F1X4_CITSI; Uncharacterized protein
TrEMBLA0A2H5NM481e-155A0A2H5NM48_CITUN; Uncharacterized protein
TrEMBLV4SDL31e-155V4SDL3_9ROSI; Uncharacterized protein
STRINGXP_006490321.11e-155(Citrus sinensis)
STRINGXP_006421846.11e-155(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-74C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]