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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10001945m | ||||||||
Common Name | CICLE_v10001563mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 309aa MW: 34028.3 Da PI: 8.4527 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.3e-21 | 117 | 166 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Ciclev10001945m 117 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 166 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81995 | 4.45E-5 | 41 | 111 | No hit | No description |
CDD | cd00018 | 3.63E-34 | 116 | 176 | No hit | No description |
SMART | SM00380 | 4.0E-38 | 117 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 117 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-23 | 117 | 175 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.143 | 117 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-14 | 118 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MAATMDFYSS RPVESSCDPF GGELMEALEP FMKSASASTS PSLQQQQQHY QQGTVGLNNL 60 NLFQIQQIQA QIQLQNPNFW PQQQQKSHLY PQGLNFLSPK PVPMKTVGCP PPKPAKLYRG 120 VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA EEAALAYDKA AYKLRGDFAR LNFPNLRHNG 180 SHIGGEFGEY KPLHSSVDAK LAAICENLAE TQKLGTSKKE KQSNSAQKKR HRSGNKKVDV 240 VEGAGGAGVG VKSECSLSDG SAGSSPVSDL TCQDLTEPPS ELELDAASEN FMLQKYPSYE 300 IDWASILS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 116 | 174 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.4829 | 0.0 | abscission zone| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU921591 | 2e-59 | EU921591.1 Citrus unshiu clone GB-CU-040 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434017.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 isoform X2 | ||||
Swissprot | Q8H1E4 | 7e-92 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | V4T2A7 | 0.0 | V4T2A7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434018.1 | 1e-169 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 8e-71 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10001945m |
Entrez Gene | 18041505 |
Publications ? help Back to Top | |||
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