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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10001730m | ||||||||
Common Name | CICLE_v10001730mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 343aa MW: 39303.1 Da PI: 6.1391 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.8 | 1.2e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng+ KKA+ELSvLCd++va+i+fs++g++ +s Ciclev10001730m 9 KRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFS 58 79*******************************************98776 PP | |||||||
2 | K-box | 23.1 | 3.2e-09 | 103 | 173 | 2 | 71 |
K-box 2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 q++s+ +++++ e+ qqe+ k k++i+n+++ +R + + e +l e+++ eq Le+ lk++R +K+ Ciclev10001730m 103 QATSNPTtNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHL 173 5555555699************************77777666666679********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.885 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-31 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.44E-38 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 8.1E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-26 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGRVKVQIKR IENTTNRQVT FSKRRNGLVK KAYELSVLCD VDVALIMFSP SGRVSLFSGN 60 KSMEEILARY VNLPEHERGR LRNQEFLQRA LGKLRSEANQ TYQATSNPTT NTDSHLEEVQ 120 QEIVKCKSQI QNMEKRLRIF EEDPSEMTTL YEIKHREQIL EETLKQVRIR KHLLEENCNS 180 SSTPATSQAH LPPAETSDHM NGFVTESPNN ILEWLPHRDS QVHNLNILDS NGLLPLRDEP 240 QEATEILVPP LNMFRGHNMN IDGQISRRDG LEDDNNDMQR PQFGQVIDVN FSPWTDFYPS 300 GNCPTPAGQT RGRDLLDLYL SQFTPSTILS TPNDQHPTWH FI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-18 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6byy_B | 1e-18 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6byy_C | 1e-18 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6byy_D | 1e-18 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6bz1_A | 2e-18 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6bz1_B | 2e-18 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6bz1_C | 2e-18 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6bz1_D | 2e-18 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM475322 | 6e-60 | AM475322.2 Vitis vinifera contig VV78X237798.10, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024951803.1 | 0.0 | agamous-like MADS-box protein AGL104 isoform X2 | ||||
TrEMBL | V4SGM7 | 0.0 | V4SGM7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006433588.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16199 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 4e-54 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10001730m |
Entrez Gene | 18041117 |