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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g10610 | ||||||||
Common Name | GSCOC_T00032554001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 450aa MW: 50750.3 Da PI: 4.7291 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.9 | 1.8e-31 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyW 83 lp+G++F+P+d+e++++ L kv ++ +e e+i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+ + +W Cc11_g10610 58 LPRGVKFDPSDQEIIWHLLG-KVGIENmkphpfIE--EFIPTVNeddgICYTHPQNLP-GVKQDGSVAHFFHRAIKAYNTGTRKRRKilgdsSGDVRW 151 799************76665.55444434654322..33444433345**********.677888899******************75665545778* PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tg++k+v+ + ++g+kk++v+y r k+ekt+Wvmh+y+l Cc11_g10610 152 HKTGRTKPVHL-DCIQKGCKKIMVLYlsPVRGGKPEKTNWVMHQYHL 197 ***********.9999**********7634777777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-37 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.399 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-13 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MARPSWLVDS NRIATKIRSA SGASNLQQVN WTSNPTKTCP NCQHVIDNSD VTQEWPGLPR 60 GVKFDPSDQE IIWHLLGKVG IENMKPHPFI EEFIPTVNED DGICYTHPQN LPGVKQDGSV 120 AHFFHRAIKA YNTGTRKRRK ILGDSSGDVR WHKTGRTKPV HLDCIQKGCK KIMVLYLSPV 180 RGGKPEKTNW VMHQYHLGTE EDEREGEYVI SKVFYQQQQV KQNEKAEVEV PEDDASIVKV 240 DPVTPKSVTP EPPRTESHFP DCDAQESVLP AAQHHGVVCM EDEVRPPSDQ PNCEDPVSAV 300 DLADQQDDKT DNDAGEKREW WDSESQYLLD SQQLVEALSL CDEFLRSQSP NRDGDKNEQE 360 LKPKPRLADY AHLGPEHLKK DLEECQDLVL DPVNLELDTP PDFRLSQLEF ASQDSFISWG 420 GNKLQEFASQ DSFISWGGNK SADIEEHGT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096929.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A068TYZ2 | 0.0 | A0A068TYZ2_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002122 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |