PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g10560
Common NameGSCOC_T00041031001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 311aa    MW: 35181.6 Da    PI: 8.1048
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g10560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.38.1e-46131413128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdkevlsk..k 96 
                  pGfrFhPt+eel+++yLk  v gkkl++ ++i  ++iy+++PwdLp  ++ +e+ewyfF++rd+k  +  g r+nr+tk+g+Wkatg+d+++ls    
  Cc09_g10560  13 PGFRFHPTEEELLDFYLKSTVLGKKLHC-DIIGCLNIYDHDPWDLPGLARIGEREWYFFVPRDRKRGSggGGRPNRTTKRGFWKATGSDRKILSLsnP 109
                  9***************************.99***************8778899************9963367********************997656 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ +glkktLvfy+grap+g ktdWvm+eyrl
  Cc09_g10560 110 KKMIGLKKTLVFYTGRAPRGCKTDWVMNEYRL 141
                  778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.40111170IPR003441NAC domain
SuperFamilySSF1019416.8E-5312170IPR003441NAC domain
PfamPF023654.7E-2513141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDDSTTSSDL ELPGFRFHPT EEELLDFYLK STVLGKKLHC DIIGCLNIYD HDPWDLPGLA  60
RIGEREWYFF VPRDRKRGSG GGGRPNRTTK RGFWKATGSD RKILSLSNPK KMIGLKKTLV  120
FYTGRAPRGC KTDWVMNEYR LPDHHDRDHR TCHSLSGTPN AVVLCKIYRK ATSLRVLEQR  180
AGVDQQQPEE AKALSIPVLL HHHHHTSKLS SGLDKKHVAI TPAITADDDE EDDEDDHDSL  240
ECKGKSRTCT NNLRLPSTTT TGKSGNKLAE LQVPSRLSMD WTQDPFWAQL RSPWLDNLAT  300
PNYHANVLNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-431317319168NO APICAL MERISTEM PROTEIN
1ut4_B8e-431317319168NO APICAL MERISTEM PROTEIN
1ut7_A8e-431317319168NO APICAL MERISTEM PROTEIN
1ut7_B8e-431317319168NO APICAL MERISTEM PROTEIN
3swm_A8e-431317322171NAC domain-containing protein 19
3swm_B8e-431317322171NAC domain-containing protein 19
3swm_C8e-431317322171NAC domain-containing protein 19
3swm_D8e-431317322171NAC domain-containing protein 19
3swp_A8e-431317322171NAC domain-containing protein 19
3swp_B8e-431317322171NAC domain-containing protein 19
3swp_C8e-431317322171NAC domain-containing protein 19
3swp_D8e-431317322171NAC domain-containing protein 19
4dul_A8e-431317319168NAC domain-containing protein 19
4dul_B8e-431317319168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027088277.10.0NAC domain-containing protein 22-like isoform X2
RefseqXP_027185268.10.0NAC domain-containing protein 22-like isoform X2
SwissprotQ10S654e-91NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A068V1R70.0A0A068V1R7_COFCA; Uncharacterized protein
STRINGGLYMA11G10230.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35312248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-78NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]