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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g01580 | ||||||||
Common Name | GSCOC_T00038365001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | SRS | ||||||||
Protein Properties | Length: 380aa MW: 42066.7 Da PI: 7.5774 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 24.4 | 8.1e-08 | 46 | 82 | 5 | 41 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvks 41 + +C CGn a+ C ++ C+ CC C+ hv Cc08_g01580 46 KPKCIKCGNVARSRCPYQSCKSCCAKAQNPCHIHVLK 82 568*******************************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.5E-5 | 48 | 90 | IPR007818 | Protein of unknown function DUF702 |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MAASSPALSN NSNDTPSSSG AGAATFNVNT PPSAAATSKN LRGLNKPKCI KCGNVARSRC 60 PYQSCKSCCA KAQNPCHIHV LKGGSNIPDK INSSSSPATD PQSADVSHSG NSHRVASLRQ 120 LSNTFAQFNN LQTPVRSRKP LTRKDAQVIN EWRFLKLREF RDRNIEAENE AFDRYTRNVS 180 LLEEVFCVNS ALDGQSEEGS SAPNTDRSVD DCNEIMVPGL KLKLRSNPVR IENFRKRVQY 240 IVDQGLRELN NIESNDGNDE LGDPDETGNR PKKMKSSWRA ERASTLSDLI DKLNKARNEE 300 DLKACFDMYS RISKRASKTS QVDSVLAEAS DEQNPIDNLL HRERASYAPP KWFSSTPIDQ 360 ESLCRIDSYF CSLEDVEDL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027084205.1 | 0.0 | uncharacterized protein LOC113706491 | ||||
TrEMBL | A0A068UY06 | 0.0 | A0A068UY06_COFCA; Uncharacterized protein | ||||
STRING | XP_009786844.1 | 1e-145 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8544 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32730.1 | 4e-95 |