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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g15390 | ||||||||
Common Name | GSCOC_T00036481001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 387aa MW: 42845.4 Da PI: 4.904 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.3 | 5.8e-21 | 193 | 243 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Cc07_g15390 193 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 243 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.10E-34 | 192 | 252 | No hit | No description |
PROSITE profile | PS51032 | 23.235 | 193 | 250 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-23 | 193 | 251 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 193 | 251 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-38 | 193 | 256 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-14 | 194 | 243 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 194 | 205 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 216 | 232 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MATAIDIYSY SNPVFSLSSD PLREELMKAL EPFMKGASSL PSSPTTTSSP FSSSSSSLSP 60 PSTSSSSSCS SYYPFDSSSF SSEPNMYSSF TSYVPTTAHM FSQGLSSFDE MGFDEQSGGG 120 SIGLNHLTPY QILQVEAQIK LQNQQQQYLA AQSLQNYSST RQLQHQNHSP LSFLGPKPVQ 180 MKQVGTPPKP AKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA LAYDKAAYKL 240 RGEFARLNFP NLRHQLSQDF GDFKPLHSSV DAKLEAICQS LADSQKQGNT GEQHQKKVGV 300 QTIPKVENTF DDSLNSEYVY PGNEDVKVEE TSSSLSPSRS DETSSLEMSS PESEITFLDF 360 AEPTFDESEN FLLQKFPSVE IDWAAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 192 | 250 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF743541 | 0.0 | KF743541.1 Coffea arabica ERF transcription factor 02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075221.1 | 0.0 | ethylene-responsive transcription factor ERF056-like | ||||
TrEMBL | A0A068TYQ7 | 0.0 | A0A068TYQ7_COFCA; Uncharacterized protein | ||||
STRING | VIT_00s0662g00040.t01 | 1e-116 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 5e-57 | related to AP2 4 |