PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g21930
Common NameGSCOC_T00015607001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 592aa    MW: 65843 Da    PI: 6.9828
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g21930genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK58.81e-18421469452
       RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                   i+ e+l++  ++++ dAAk L+v+ ++LKriCR+yGI+RWP Rk +++
  Cc06_g21930 421 GITREVLEQISKMKLVDAAKFLDVSRSTLKRICREYGIRRWPPRKARKV 469
                  6999*****************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.003402490IPR003035RWP-RK domain
PfamPF020422.2E-16422469IPR003035RWP-RK domain
SuperFamilySSF542772.19E-13503590No hitNo description
Gene3DG3DSA:3.10.20.2404.3E-13509590No hitNo description
PROSITE profilePS5174514.387511591IPR000270PB1 domain
SMARTSM006662.3E-6511591IPR000270PB1 domain
PfamPF005648.7E-13512590IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MKLLNITLSF NSALFISWMV CLPEFCNMSF VCIPLQKMDL KTTYSSHDVF SCESCSREYF  60
EILTAVNVVR TRHLLSATRT WIASHEILSY GMYIVRKGQG VVGKAFSSKS ACFCRDIRQL  120
GITEHPLVPI ARCYKHSACF AVCLQSSCSN NCIYVLEFLL PRNEKDHGDP RTLLHMLMET  180
LTLHLQSSFK IASGQEFGKK LSVEVIKVSS EDKFDSFELC NTIGDESTPR PAEVRKPGAM  240
VQLDFSSQQV DAANGSTDGI HEQQNGSVGS TPRLAAQGGG EIMQVDFSSH PVDTANGYIN  300
GVHGQQSGIV GSPPRSEHVQ GFVNISYQEL MAVQINASNV AGVEAGNNSI NGIYEQQNGI  360
VGSSTEQELA QNIVSIANHE PIAEINVADP ERDGPSIEQR GNEVTDVKKQ KSRCTLKSEL  420
GITREVLEQI SKMKLVDAAK FLDVSRSTLK RICREYGIRR WPPRKARKVI QAFAVQKVIQ  480
PFAVQKVIQP STENIEGLHW SDATRLENGS CMWVKADYQQ YKIKFRLPLS ARKVNLEEKV  540
AQRLNLSIGS FKIEYEDEDN DWIWITCDED LSTSMSTLSS LGRTTIKMLV S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027174643.10.0protein NLP7-like
TrEMBLA0A068V5650.0A0A068V565_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4897426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.13e-18NIN like protein 7