PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g21870

Common Name

GSCOC_T00015596001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 409aa MW: 46092.4 Da PI: 6.7879

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g21870	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	60.2	3.8e-19	243	290	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LK iCR+yGI+RWP Rk +++ Cc06_g21870 243 ITREVLEQNSTRKLEDAAKNIGVSRSTLKHICREYGIHRWPPRKARKV 290 899*****************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.537	226	310	IPR003035	RWP-RK domain
Pfam	PF02042	8.4E-16	243	290	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.81E-15	320	405	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-13	321	402	No hit	No description
PROSITE profile	PS51745	14.659	323	405	IPR000270	PB1 domain
SMART	SM00666	9.0E-11	323	405	IPR000270	PB1 domain
Pfam	PF00564	2.5E-13	324	403	IPR000270	PB1 domain
CDD	cd05992	5.89E-13	326	403	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MPILLSHSST GQDGEIAKIE EALSEVTAIC GLDDTETWIT SGEILSSHGG VDFIHKGQGV 60 VGRAFSSKSA CFCRDIKQLS ITEYPLVPIA RRFNYSACFA VCLQSPCSSN CIYVLEFFLP 120 MNKKDYRDPR TLLHSLMETL KKRLQNSFKI ASGQELGQKL TVEVIKQVDT ANAYINGVHE 180 QQNGIVRSTT GQELVQNIVS IAHDEPIVDD PQRDGASIEQ RDNEVTNLKM QKPSYTLKSD 240 LGITREVLEQ NSTRKLEDAA KNIGVSRSTL KHICREYGIH RWPPRKARKV NQAFAEQKIV 300 QPSPEDTHEH HQSGAARLED DNGMWVKAEY QGRMIKFRLP FSARNINLEE KVAQLLNLAM 360 GSFKIEYQDE DNDWIWITRD EDLRTSMSTL SSLGRTTIKM LVKLIEHL*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MPILLSHSST GQDGEIAKIE EALSEVTAIC GLDDTETWIT SGEILSSHGG VDFIHKGQGV  60
VGRAFSSKSA CFCRDIKQLS ITEYPLVPIA RRFNYSACFA VCLQSPCSSN CIYVLEFFLP  120
MNKKDYRDPR TLLHSLMETL KKRLQNSFKI ASGQELGQKL TVEVIKQVDT ANAYINGVHE  180
QQNGIVRSTT GQELVQNIVS IAHDEPIVDD PQRDGASIEQ RDNEVTNLKM QKPSYTLKSD  240
LGITREVLEQ NSTRKLEDAA KNIGVSRSTL KHICREYGIH RWPPRKARKV NQAFAEQKIV  300
QPSPEDTHEH HQSGAARLED DNGMWVKAEY QGRMIKFRLP FSARNINLEE KVAQLLNLAM  360
GSFKIEYQDE DNDWIWITRD EDLRTSMSTL SSLGRTTIKM LVKLIEHL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027069177.1	0.0	protein NLP7-like
Refseq	XP_027069178.1	0.0	protein NLP7-like
TrEMBL	A0A068V6V7	0.0	A0A068V6V7_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-40	NIN like protein 7