PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g21860

Common Name

GSCOC_T00015594001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 588aa MW: 65330.1 Da PI: 5.5732

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g21860	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	57.9	2e-18	426	473	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI RWP Rk +++ Cc06_g21860 426 ITREVLEQNSMRKLEDAAKNIGVSRSTLKRICREYGIGRWPPRKERKV 473 899*****************************************7775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.776	409	493	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-15	426	473	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.81E-14	506	586	No hit	No description
SMART	SM00666	1.1E-10	507	587	IPR000270	PB1 domain
PROSITE profile	PS51745	14.114	507	587	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.9E-15	510	586	No hit	No description
Pfam	PF00564	1.1E-13	510	586	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MRYWVLPIYH HPTRHLPIGV LEIVSPSDFV GLPRYRVLEN LQNLLLVVNL TTTCVSLLAE 60 VNSCQRGEIA IIDEASSKVR KICGLGYGVT KTWTISGEIL SSHGGVDFIQ KGQGVVGKAF 120 SSKSACFCRD IRQLSITEYP LVPNARYWKS STCFAVCLQS SCSNNCTYVL EFFIPTYEKH 180 SFGDLRTSLN SLMESLKERL GSSFKIASGQ ELGKKLAVEV IKVSPEDEFD SFEICSTTGI 240 ESTPRLGEVQ GGEGMMQLDF SSQQVDAANG SMNGIHEQQN GSVGSTPRLA KAQGGEGMMQ 300 LDFSSQQVDT ANACINGVHG PQNGIVGSPP RREPTQDFIN ISYQELNLAG VDIAHNSMDG 360 IYEQQNGIVR STTGQELVQN MVSKAHDEPI VEDPERDDAI IEQSGNEVTN LKMQEPSCTL 420 KSDLGITREV LEQNSMRKLE DAAKNIGVSR STLKRICREY GIGRWPPRKE RKVNQVFAKQ 480 KVVQPATEYI EENHQSDATR LEDDISMWVI KAKYQEDKIK FELSSSARKI DLEKNIAQRF 540 NLSLGSFKIK YQDELNDWIL ITCDTDLSFC MKTLSKLGRT TIEMLVS*

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MRYWVLPIYH HPTRHLPIGV LEIVSPSDFV GLPRYRVLEN LQNLLLVVNL TTTCVSLLAE  60
VNSCQRGEIA IIDEASSKVR KICGLGYGVT KTWTISGEIL SSHGGVDFIQ KGQGVVGKAF  120
SSKSACFCRD IRQLSITEYP LVPNARYWKS STCFAVCLQS SCSNNCTYVL EFFIPTYEKH  180
SFGDLRTSLN SLMESLKERL GSSFKIASGQ ELGKKLAVEV IKVSPEDEFD SFEICSTTGI  240
ESTPRLGEVQ GGEGMMQLDF SSQQVDAANG SMNGIHEQQN GSVGSTPRLA KAQGGEGMMQ  300
LDFSSQQVDT ANACINGVHG PQNGIVGSPP RREPTQDFIN ISYQELNLAG VDIAHNSMDG  360
IYEQQNGIVR STTGQELVQN MVSKAHDEPI VEDPERDDAI IEQSGNEVTN LKMQEPSCTL  420
KSDLGITREV LEQNSMRKLE DAAKNIGVSR STLKRICREY GIGRWPPRKE RKVNQVFAKQ  480
KVVQPATEYI EENHQSDATR LEDDISMWVI KAKYQEDKIK FELSSSARKI DLEKNIAQRF  540
NLSLGSFKIK YQDELNDWIL ITCDTDLSFC MKTLSKLGRT TIEMLVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027156811.1	0.0	protein NLP7-like
TrEMBL	A0A068V515	0.0	A0A068V515_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-21	NIN like protein 7