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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g15960 | ||||||||
Common Name | GSCOC_T00038621001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 311aa MW: 35227 Da PI: 8.1853 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.2 | 8.1e-50 | 6 | 132 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhP+deel+++yL k+v+ + + + evd++k+ePwd+p +++ + ke+yf+s+rd+kyatg r+nrat sgyWkatgkd++vl+ kg Cc05_g15960 6 LPPGFRFHPRDEELICDYLMKRVACCDQPP--LMIEVDLNKCEPWDIPaENACVGGKEYYFYSQRDRKYATGLRTNRATLSGYWKATGKDRPVLR-KG 100 79*********************9988666..6899************555666899*************************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +lvg++ktLvfy+grapkg+ktdWvmhe+rle Cc05_g15960 101 TLVGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 132 9****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-57 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.381 | 6 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-25 | 7 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MVEAKLPPGF RFHPRDEELI CDYLMKRVAC CDQPPLMIEV DLNKCEPWDI PAENACVGGK 60 EYYFYSQRDR KYATGLRTNR ATLSGYWKAT GKDRPVLRKG TLVGMRKTLV FYQGRAPKGR 120 KTDWVMHEFR LEGPFGPPKL SSLKEDWVLC RVFFKNRDNN IIAAKQGMDM NSYDGETSPS 180 PLPPLMDPYF KFGQTQTNTN EHEQVPCFSI FSPDQANNNS QPFSYLAHMD VPSFSTKNMP 240 TFNFGGIPDF GAYFSSSCRE QKVIKAVLNQ LTRMENASPN VKGSPSFGEA STSDSFLSEV 300 ALSTMWNNQY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-48 | 2 | 156 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027062380.1 | 0.0 | NAC domain-containing protein 21/22-like isoform X2 | ||||
Swissprot | Q84TE6 | 1e-107 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A068UYJ9 | 0.0 | A0A068UYJ9_COFCA; Uncharacterized protein | ||||
STRING | GLYMA15G40510.1 | 1e-133 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-110 | NAC domain containing protein 1 |