![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc05_g12510 | ||||||||
Common Name | GSCOC_T00021183001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 36506.3 Da PI: 9.3353 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.5 | 6.3e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ ++ Cc05_g12510 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-SIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSgGT 111 79****************************.89***************988899***************************************99777 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy g+ pkg kt+W+mheyrl Cc05_g12510 112 QKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 88***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-64 | 7 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.159 | 15 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MESTDSSTGS QQPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVSIIAEV DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLVDNKTSIK PPGCDIGNKK GSLRLDDWVL CRIYKKNNTP 180 RPMDHDRDDF NDMMPSIPPS LPPSMSMSSQ QKILGLKASN FGALLENEQS AFEVPGMLTS 240 NHVIPAKRAL PALYWNDEGN PISPSNKRFL ADSGDGNIGR TNNDENSSIA TLLSQLPQTT 300 SLHQQAMLGS LGDGVFRQPY QVTGMNWYS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-75 | 1 | 179 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-75 | 1 | 179 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-75 | 1 | 179 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-75 | 1 | 179 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-75 | 1 | 179 | 6 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-75 | 1 | 179 | 6 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
![]() |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063640.1 | 0.0 | NAC transcription factor 56-like | ||||
Swissprot | Q9LD44 | 1e-119 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A068UE09 | 0.0 | A0A068UE09_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_022751m | 1e-179 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-110 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|