PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g38950
Common NameGSCOC_T00027787001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 318aa    MW: 35688.5 Da    PI: 4.3877
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g38950genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1992140355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+W+AeIrdp     r +r++lg+++taeeAa  +++a+ +++g
  Cc02_g38950  92 YRGVRQRP-WGKWAAEIRDP---A-RkARIWLGTYDTAEEAAMVYDRAAIQIRG 140
                  9*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-3091147IPR001471AP2/ERF domain
SMARTSM003802.4E-3791154IPR001471AP2/ERF domain
PROSITE profilePS5103223.60491148IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2291147IPR016177DNA-binding domain
CDDcd000181.31E-3292147No hitNo description
PRINTSPR003674.6E-1192103IPR001471AP2/ERF domain
PfamPF008471.8E-1392140IPR001471AP2/ERF domain
PRINTSPR003674.6E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDTDKLSQPL RKTVHRKILD NTAINMPRVV RIQFTDCDAT DSSGDDDDDG RLLSPFFRPP  60
RIKKLLSEIV IEKKKYSCPR KATFVDEVKN AYRGVRQRPW GKWAAEIRDP ARKARIWLGT  120
YDTAEEAAMV YDRAAIQIRG PDALTNFIRP PEPERPDYTT TEEELAEVHA TSVSGYDSGK  180
ESENNNLCSP TSVLRFKDKH QPPQQNDHAS ASATKWAGDW RPVEPVGAES EAISNSPDDD  240
DSLLLDQCLL NEFFNLKSPS PLIYNEIIGH DDGVLELEEG NFDDDTPLDF GFGDDFGASC  300
GAWDVNDFLE DHQLLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2292147359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2292147662ATERF1
3gcc_A2e-2292147662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108508.10.0ethylene-responsive transcription factor CRF5-like
TrEMBLA0A068UKJ30.0A0A068UKJ3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-35cytokinin response factor 4