PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 242aa MW: 25330.8 Da PI: 7.5559

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g36620	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.5	1.3e-39	25	125	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPv G+v++i++lqqq+ +l+ael++l Cc02_g36620 25 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVFGCVAHIFALQQQVVNLQAELSYL 122 7*********************9989******************************************************************99 PP DUF260 98 kee 100 + + Cc02_g36620 123 QGH 125 865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.847	24	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-38	25	123	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSANTSSSPS GGAAGSSSGN TGGGPCGACK FLRRKCVAGC IFAPYFDSEQ GAAHFAAVHK 60 VFGASNVSKL LLHIPVHKRL DAVVTICYEA QARLRDPVFG CVAHIFALQQ QVVNLQAELS 120 YLQGHLATLE LPPPPPPSAQ PQPIIAPPSL TIADLPTGSS SAPATYDLSS LFDPVVQLPW 180 TMQQPRQMDS HQFGAARAPA EASSSAGTGD LQELARELLH RHRTSSTVPC NEVPPLPPHS 240 K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-36	23	120	9	105	LOB family transfactor Ramosa2.1
5ly0_B	5e-36	23	120	9	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027102496.1	1e-176	LOB domain-containing protein 30-like
Swissprot	O81323	2e-79	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A068VAN4	1e-174	A0A068VAN4_COFCA; Uncharacterized protein
STRING	XP_009604912.1	1e-105	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	9e-79	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]