PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g10680
Common NameGSCOC_T00029503001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 374aa    MW: 41026.9 Da    PI: 6.1553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g10680genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0003150172123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ Cg++F++   L  H  +H
  Cc02_g10680 150 YECKTCGRTFPSFQALGGHRASH 172
                  99**********99999998887 PP
2zf-C2H212.60.00042242264123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  Cc02_g10680 242 HECSHCGAEFPSGQALGGHMRRH 264
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-8149172No hitNo description
PfamPF139125.2E-13149174IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.177150177IPR007087Zinc finger, C2H2
SMARTSM003550.038150172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-8237264No hitNo description
SMARTSM003550.0086242264IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-13242266IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533242269IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVEAVEEVAG PQDLPHIVKG KRTKRQRPQS PIPFTITAQY SSSGEGGYVS NGDNCVNNVN  60
NNTSNNNNHN NSSSSSAEEA RPPDDHASNE EDEYTAKCLI LLAQGGDVIK EPPAINKFDQ  120
AQEFGTEKFN SKRYIEAPIS GNGKAGMYVY ECKTCGRTFP SFQALGGHRA SHKKPKNMAA  180
AEEKKLYFDM SDDEEETIFK NGKNKSNYNN SSPLSLELIN NNNRGTSSNS NLYKSASFPK  240
IHECSHCGAE FPSGQALGGH MRRHRGAPAM TSTTLSLGQL SPEETTDQDS DEAEANKRTS  300
NGLSLDLNLP APEDDHHNKG PNKFSLASKH QQIPYQQHQQ QNQKEEEEEK EAEAEAKPAL  360
VLSSTPKLVR CHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115655.10.0zinc finger protein ZAT5-like
TrEMBLA0A068TV170.0A0A068TV17_COFCA; Uncharacterized protein
STRINGXP_009609087.17e-82(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-61C2H2 family protein