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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g12690 | ||||||||
Common Name | GSCOC_T00028211001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | WOX | ||||||||
Protein Properties | Length: 238aa MW: 26882.3 Da PI: 8.8362 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.2e-21 | 19 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq++ Le+l+++ r+psae++++++++l +++ ++V++WFqN++a++++ Cc01_g12690 19 SRWNPTKEQIDMLESLYKQgLRTPSAEQIQQITNRLraygHIEGKNVFYWFQNHKARQRQ 78 6*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.8 | 2.1e-37 | 18 | 80 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQi +Le+lyk+GlrtP++e+iq+it++L++yG+ie+kNVfyWFQN+kaR+rqkq Cc01_g12690 18 GSRWNPTKEQIDMLESLYKQGLRTPSAEQIQQITNRLRAYGHIEGKNVFYWFQNHKARQRQKQ 80 58***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.965 | 14 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-6 | 16 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-13 | 18 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-9 | 19 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.1E-19 | 19 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.48E-7 | 20 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MESHDNLDMP ISGGAPVGSR WNPTKEQIDM LESLYKQGLR TPSAEQIQQI TNRLRAYGHI 60 EGKNVFYWFQ NHKARQRQKQ KQDHVSPFNR FLHKTASVLP PCTNVLCSPY YMPYPETGLC 120 HQQQQLSKVL LPRSFKRRPI LPEKLEKSKL LECVMSNSKQ FNQETLDLFP QQPTGTLQSR 180 TAAAVASCSF PSNYFGYSTA TPSTSSATRS FTDKGGYDDH HPFFDFLCGN NGSCDGH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027126371.1 | 1e-175 | WUSCHEL-related homeobox 2-like | ||||
TrEMBL | A0A068UL49 | 1e-179 | A0A068UL49_COFCA; Uncharacterized protein | ||||
STRING | XP_009758504.1 | 7e-71 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11414 | 19 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 1e-50 | WUSCHEL related homeobox 2 |