PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g10260
Common NameGSCOC_T00024109001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 336aa    MW: 36490.2 Da    PI: 6.3422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g10260genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005141163123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  Cc01_g10260 141 YQCKTCNRTFPSFQALGGHRASH 163
                  9***********99999998887 PP
2zf-C2H211.80.00077239261123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F +   L  H+r+H
  Cc01_g10260 239 HECSICGAEFASGQALGGHMRRH 261
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-12140165IPR007087Zinc finger, C2H2
SuperFamilySSF576673.13E-8140163No hitNo description
SMARTSM003550.026141163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.346141168IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SuperFamilySSF576673.13E-8234261No hitNo description
SMARTSM003550.016239261IPR015880Zinc finger, C2H2-like
PfamPF139126.6E-12239262IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.118239266IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDALEEFSGS NDHSIVIKGK RTKRRQRPLS PVGRAAVVTS SSSSGGGGDD QGGGKDGEVL  60
GYIYSLIPSC NTSTSDISIS ATSTDQEDED MANCLILLAQ GESCRKQVDQ DRESKMEKFT  120
SRRFNEMATT TTGGKVGFFV YQCKTCNRTF PSFQALGGHR ASHKKPKINI EDNKATIVTP  180
SNDHHHHQEE EEEEEEEKES AGEEQAAGQL IGRQSPPLSI QSTNKPCSTA ASNKASKSHE  240
CSICGAEFAS GQALGGHMRR HRNSMTASTS KVATILETSP SIDHHDQKPR NIFPLDLNLP  300
APSEDDVHRD LKFQFSANQQ PHLVFSAPAL VDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182333.10.0zinc finger protein ZAT5
TrEMBLA0A068UEU90.0A0A068UEU9_COFCA; Uncharacterized protein
STRINGXP_009613500.12e-81(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-53C2H2 family protein