PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g29760

Common Name

GSCOC_T00007169001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 410aa MW: 46173.5 Da PI: 7.5683

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g29760	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	53.7	4.1e-17	248	296	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ ++kdAAk L+v+ ++LKriCR+y I+RWP Rk +++ Cc00_g29760 248 GITREVLEQNSWRKLKDAAKVLQVSRSTLKRICREYDIRRWPPRKARKV 296 6999*****************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.275	229	316	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-15	249	296	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	9.1E-4	251	285	IPR009057	Homeodomain-like
SuperFamily	SSF54277	2.35E-15	323	408	No hit	No description
PROSITE profile	PS51745	16.215	329	409	IPR000270	PB1 domain
SMART	SM00666	5.9E-9	329	409	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-15	330	409	No hit	No description
Pfam	PF00564	5.7E-13	330	408	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MNLTTACVNL AQVNLCQRGE IAKIYKALSK VRKIHGLDDD DIITWTISGE ILSSHGGEDF 60 IRKGQGVVGR AFSSKSACFC RDIRQLSITD YPLVVQARYL KRSACFAVCL QSSCSNNCIY 120 VLEFFLPTNE KDSGDSRTLL NSIMETLKEH LGRSFKIASG QELGQKLTVE VIKVSPEDKS 180 DFFEICNTTS SESTPGLVEV QEGAGMAQLD FSSQQVDAAN GSMNEPSDSE VINTKKHKLN 240 YTLKSELGIT REVLEQNSWR KLKDAAKVLQ VSRSTLKRIC REYDIRRWPP RKARKVNQAS 300 AEQRVVQPST ENTEERHWPD TTRLGDDSSI WVKAEYQGCT MKFRLPLSAH KFNLEEKVAQ 360 RLNLPIGSFK IEYQDEENEW IWIACDEDLS TCMSTLSSLG RTTIKMLVR*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MNLTTACVNL AQVNLCQRGE IAKIYKALSK VRKIHGLDDD DIITWTISGE ILSSHGGEDF  60
IRKGQGVVGR AFSSKSACFC RDIRQLSITD YPLVVQARYL KRSACFAVCL QSSCSNNCIY  120
VLEFFLPTNE KDSGDSRTLL NSIMETLKEH LGRSFKIASG QELGQKLTVE VIKVSPEDKS  180
DFFEICNTTS SESTPGLVEV QEGAGMAQLD FSSQQVDAAN GSMNEPSDSE VINTKKHKLN  240
YTLKSELGIT REVLEQNSWR KLKDAAKVLQ VSRSTLKRIC REYDIRRWPP RKARKVNQAS  300
AEQRVVQPST ENTEERHWPD TTRLGDDSSI WVKAEYQGCT MKFRLPLSAH KFNLEEKVAQ  360
RLNLPIGSFK IEYQDEENEW IWIACDEDLS TCMSTLSSLG RTTIKMLVR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027071336.1	1e-125	protein NLP3-like
TrEMBL	A0A068VM11	0.0	A0A068VM11_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-41	NIN like protein 7