PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g14290
Common NameGSCOC_T00010612001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 280aa    MW: 31798.4 Da    PI: 7.9359
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g14290genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.71.7e-47111382128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                   pGfrFhPt+eelv++yLk+ ++gkkl+  ++i  ++iy+++Pw+Lp ++k +e+ewyfF++rd+++ +g r+nr+tk+g+Wkatg+d+++ s+   +
  Cc00_g14290  11 LPGFRFHPTEEELVSCYLKRIASGKKLPS-DIIGFLNIYHHDPWELPGMAKMGEREWYFFVHRDRRHGHGGRPNRTTKDGFWKATGSDRQIRSTsePK 107
                  69**************************9.99***************8888999*************************************9986667 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ glkk+Lvfykgrap+g++tdWvm+e+rl
  Cc00_g14290 108 KVLGLKKILVFYKGRAPRGSRTDWVMNEFRL 138
                  78***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.73310156IPR003441NAC domain
SuperFamilySSF1019416.67E-5611156IPR003441NAC domain
PfamPF023659.1E-2412138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDDNSVGELT LPGFRFHPTE EELVSCYLKR IASGKKLPSD IIGFLNIYHH DPWELPGMAK  60
MGEREWYFFV HRDRRHGHGG RPNRTTKDGF WKATGSDRQI RSTSEPKKVL GLKKILVFYK  120
GRAPRGSRTD WVMNEFRLPD HPLPKEDVVL CKIYRKATSL KILEHKAAME DVISKTLEPS  180
LSSTQPQEGI PQENLAKSLA QNQSMTNLPL TKHEDDDLLV LNSPVKFGCL KYSNDSKELQ  240
ALDVPKLSMD ETADAFWTPM RSPWLENCSL DAFASLLNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-4741568168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073432.10.0NAC domain-containing protein 22-like
SwissprotQ10S653e-83NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A068VHA40.0A0A068VHA4_COFCA; Uncharacterized protein
STRINGMigut.B00028.1.p1e-101(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35312248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.13e-78NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]