PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024914m | ||||||||
Common Name | CARUB_v10024914mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24327.1 Da PI: 9.75 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.9 | 1e-21 | 19 | 61 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ +s rqvtfskRr+g++KKA+EL++LC+ae+ +i+fs+ k Carubv10024914m 19 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKK 61 8999***********************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.591 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-30 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.67E-35 | 10 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-28 | 10 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-17 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-25 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-17 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-17 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009559 | Biological Process | embryo sac central cell differentiation | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MMSKKKESIG RQKIPMVKIK KESHRQVTFS KRRAGLFKKA SELCTLCGAE IGIIVFSPAK 60 KPFSFGHPSV ESVLDRYMSR NNMSLAQTTQ QQPQGNPAAG CELNMQLTQV LSEVEEEKKK 120 GQAMEEIRKA SVRRSATNWW EKPVEEMNMF QLQEMKNALE ELRKTVVANM APYTEVKEDV 180 YGFLDNKVAT APHPYMNMSS GLSSIYSFAN GNNCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-16 | 9 | 94 | 1 | 93 | MEF2 CHIMERA |
6byy_B | 9e-16 | 9 | 94 | 1 | 93 | MEF2 CHIMERA |
6byy_C | 9e-16 | 9 | 94 | 1 | 93 | MEF2 CHIMERA |
6byy_D | 9e-16 | 9 | 94 | 1 | 93 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024914m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006295790.1 | 1e-161 | agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 1e-127 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | R0HX76 | 1e-160 | R0HX76_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295790.1 | 1e-160 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-129 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024914m |
Entrez Gene | 17888262 |
Publications ? help Back to Top | |||
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