PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10024727m
Common NameCARUB_v10024727mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 641aa    MW: 71559.6 Da    PI: 7.6389
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10024727mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-123891248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                     ++W t+E++ll++avk++G ++W+++a ++           +++ c++++++++
  Carubv10024727m 38 QAWGTWEELLLACAVKRHGFRDWDSVATEVRsrsslpdVLASANKCRHKYRDLK 91
                     68************************************99**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-53298IPR009057Homeodomain-like
SuperFamilySSF466898.59E-63594IPR009057Homeodomain-like
SMARTSM007173.8E-73693IPR001005SANT/Myb domain
PfamPF002494.4E-123891IPR001005SANT/Myb domain
CDDcd001674.74E-73991No hitNo description
SuperFamilySSF473701.83E-17284395IPR001487Bromodomain
SMARTSM002972.0E-21288397IPR001487Bromodomain
Gene3DG3DSA:1.20.920.107.4E-16291395IPR001487Bromodomain
CDDcd043692.07E-15302392No hitNo description
PfamPF004394.5E-12302377IPR001487Bromodomain
PROSITE profilePS5001412.623307370IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MSKEEEEEAY NNNNYISSSA RDCIEQDDDD SNNTKKIQAW GTWEELLLAC AVKRHGFRDW  60
DSVATEVRSR SSLPDVLASA NKCRHKYRDL KRRFHEQEKT DTAPAEEEET TAMADEEKTE  120
NVGIPWLEEL RNLRVAELRR EVEQYDVSIL SLQLKVKKLE EEREEEKPDL EDERKKERSE  180
NDGSETEHRE KTVSAAEESD RENGSMNESN STATVGEDDR VGGGEPSQTR DDDSADNDNN  240
PDPVSKDTAG EDEEGSDSRG SEASHSDELG ESGTSERKWK RKHGGSGEIR SDESKSQPLI  300
GLLDLIRSHP RGSLFERRLR SQEAKDYKSM VKQHLDIETI QRNLKQGSYD SSTLTFYKDL  360
HLLFTNAIVF FPLSSAESMA AHELRAVVSR EMRKETRISG PRFINREVSA TNSGKADAET  420
SDSSLSRQKS SAPLVVCKKR SSVSTKASPS SSSFSQQEEM EEETLSEEKE NTVTGVRSSR  480
RASKPVAATA AISNCTTKGK SKNKLKHMES KTNPLNDNSS QQETGKTEKK MISSDKKKSV  540
ADFLKRLKKN SPQKESKDQN KSSGSGKKDS KAKPRELRSS RVGKKKAELA ITPVKRAPGR  600
PQKKTAEAEA TATASASGKR GRDTGSTGKD NKQPKKRIRR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10024727m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295614.10.0bromodomain and WD repeat-containing protein 1
TrEMBLR0FZJ30.0R0FZJ3_9BRAS; Uncharacterized protein
STRINGXP_006295614.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.10.0DNA-binding bromodomain-containing protein