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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10024727m | ||||||||
Common Name | CARUB_v10024727mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 641aa MW: 71559.6 Da PI: 7.6389 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.8 | 2.2e-12 | 38 | 91 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 ++W t+E++ll++avk++G ++W+++a ++ +++ c++++++++ Carubv10024727m 38 QAWGTWEELLLACAVKRHGFRDWDSVATEVRsrsslpdVLASANKCRHKYRDLK 91 68************************************99**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-5 | 32 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.59E-6 | 35 | 94 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-7 | 36 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-12 | 38 | 91 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.74E-7 | 39 | 91 | No hit | No description |
SuperFamily | SSF47370 | 1.83E-17 | 284 | 395 | IPR001487 | Bromodomain |
SMART | SM00297 | 2.0E-21 | 288 | 397 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 7.4E-16 | 291 | 395 | IPR001487 | Bromodomain |
CDD | cd04369 | 2.07E-15 | 302 | 392 | No hit | No description |
Pfam | PF00439 | 4.5E-12 | 302 | 377 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 12.623 | 307 | 370 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MSKEEEEEAY NNNNYISSSA RDCIEQDDDD SNNTKKIQAW GTWEELLLAC AVKRHGFRDW 60 DSVATEVRSR SSLPDVLASA NKCRHKYRDL KRRFHEQEKT DTAPAEEEET TAMADEEKTE 120 NVGIPWLEEL RNLRVAELRR EVEQYDVSIL SLQLKVKKLE EEREEEKPDL EDERKKERSE 180 NDGSETEHRE KTVSAAEESD RENGSMNESN STATVGEDDR VGGGEPSQTR DDDSADNDNN 240 PDPVSKDTAG EDEEGSDSRG SEASHSDELG ESGTSERKWK RKHGGSGEIR SDESKSQPLI 300 GLLDLIRSHP RGSLFERRLR SQEAKDYKSM VKQHLDIETI QRNLKQGSYD SSTLTFYKDL 360 HLLFTNAIVF FPLSSAESMA AHELRAVVSR EMRKETRISG PRFINREVSA TNSGKADAET 420 SDSSLSRQKS SAPLVVCKKR SSVSTKASPS SSSFSQQEEM EEETLSEEKE NTVTGVRSSR 480 RASKPVAATA AISNCTTKGK SKNKLKHMES KTNPLNDNSS QQETGKTEKK MISSDKKKSV 540 ADFLKRLKKN SPQKESKDQN KSSGSGKKDS KAKPRELRSS RVGKKKAELA ITPVKRAPGR 600 PQKKTAEAEA TATASASGKR GRDTGSTGKD NKQPKKRIRR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10024727m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006295614.1 | 0.0 | bromodomain and WD repeat-containing protein 1 | ||||
TrEMBL | R0FZJ3 | 0.0 | R0FZJ3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006295614.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4123 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 0.0 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10024727m |
Entrez Gene | 17888809 |