PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10019873m | ||||||||
Common Name | CARUB_v10019873mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | FAR1 | ||||||||
Protein Properties | Length: 719aa MW: 81843.3 Da PI: 6.4472 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.7 | 1.9e-23 | 101 | 184 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C+++g++ ++ + ++r+etrtgC+a++++++ ++++w+v++++l+HnH++ Carubv10019873m 101 YYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKMVKEAN-----SRRKETRTGCQAMIRLRLIDSDRWKVDQVKLDHNHSFD 184 9***************************************998877.....8999*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.5E-21 | 101 | 184 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.8E-26 | 313 | 407 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.099 | 597 | 636 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-6 | 607 | 634 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.1E-6 | 611 | 638 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MVEIGNSVYS PSDQSLSPHP HLCITMEEEG SEQVVVEDDL PIEDDDPDLG IDLDDDCDGL 60 LQIAANNTLE TETGIGCDAP PTRPAPAPGM EFESYDDAYS YYNSYARELG FAIRVKSSWT 120 KRNSKEKRGA VLCCNCQGFK MVKEANSRRK ETRTGCQAMI RLRLIDSDRW KVDQVKLDHN 180 HSFDPQRAHN SKSHKKNKSS SSASASASAS SYSNTQPQPP PLHVQVRTIK LYRVVDTPPP 240 HGSSTSAGHP FHSSRPLDLP GGGFRHLQDF FFHFQLTNPN FLYLMDLTDD GSLRTVFWID 300 ARARAAYSHF GDVVFFDTTC LSNSYKLPLI AFVGIDHHGD SILLGCALLP DQSFDTYLWL 360 FRAWLTCMLG RPPQTFITQQ CKAMRTAVSQ VFPRAHHRLS LTHVLHNIFQ SVVQLQQDSD 420 LFRMVLNRVV YGCLKVEEFE TAWEEMIIRF GLTDHETIRY VFQDREQWAP VYLKDTFLAG 480 ALTFPLGDVA APFIFSGYVH ENTSLREFLE GYESFLDGKY TRQALCDSES SKFIPELKTT 540 HPYESQMANV FTVEIFRRFQ DEVSAMSSCF GITQVHSNGS ASSYVVKERE GEKVRDFEVI 600 YETSAEAQVR CFCVCGGFSF NGYQCRHVLL VLSHNGLQEV PPQYILRRWR KDVKRLYVAD 660 FGSGRVDIMN QDQWYEHLHR KAMQVVEQGM RSKEHCRVAW EALKEGRNRV QFVTEKPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10019873m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC009322 | 0.0 | AC009322.1 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence. | |||
GenBank | AC011717 | 0.0 | AC011717.6 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006300794.1 | 0.0 | protein FAR1-RELATED SEQUENCE 8 | ||||
Swissprot | Q9S793 | 0.0 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | R0GD24 | 0.0 | R0GD24_9BRAS; Uncharacterized protein | ||||
STRING | XP_006300794.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14233 | 20 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 0.0 | FAR1-related sequence 8 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10019873m |
Entrez Gene | 17895769 |
Publications ? help Back to Top | |||
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