PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10019873m

Common Name

CARUB_v10019873mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 719aa MW: 81843.3 Da PI: 6.4472

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10019873m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.7	1.9e-23	101	184	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C+++g++ ++ + ++r+etrtgC+a++++++ ++++w+v++++l+HnH++ Carubv10019873m 101 YYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKMVKEAN-----SRRKETRTGCQAMIRLRLIDSDRWKVDQVKLDHNHSFD 184 9*************************************998877.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-21	101	184	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.8E-26	313	407	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.099	597	636	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-6	607	634	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-6	611	638	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence Send to blast
MVEIGNSVYS PSDQSLSPHP HLCITMEEEG SEQVVVEDDL PIEDDDPDLG IDLDDDCDGL 60 LQIAANNTLE TETGIGCDAP PTRPAPAPGM EFESYDDAYS YYNSYARELG FAIRVKSSWT 120 KRNSKEKRGA VLCCNCQGFK MVKEANSRRK ETRTGCQAMI RLRLIDSDRW KVDQVKLDHN 180 HSFDPQRAHN SKSHKKNKSS SSASASASAS SYSNTQPQPP PLHVQVRTIK LYRVVDTPPP 240 HGSSTSAGHP FHSSRPLDLP GGGFRHLQDF FFHFQLTNPN FLYLMDLTDD GSLRTVFWID 300 ARARAAYSHF GDVVFFDTTC LSNSYKLPLI AFVGIDHHGD SILLGCALLP DQSFDTYLWL 360 FRAWLTCMLG RPPQTFITQQ CKAMRTAVSQ VFPRAHHRLS LTHVLHNIFQ SVVQLQQDSD 420 LFRMVLNRVV YGCLKVEEFE TAWEEMIIRF GLTDHETIRY VFQDREQWAP VYLKDTFLAG 480 ALTFPLGDVA APFIFSGYVH ENTSLREFLE GYESFLDGKY TRQALCDSES SKFIPELKTT 540 HPYESQMANV FTVEIFRRFQ DEVSAMSSCF GITQVHSNGS ASSYVVKERE GEKVRDFEVI 600 YETSAEAQVR CFCVCGGFSF NGYQCRHVLL VLSHNGLQEV PPQYILRRWR KDVKRLYVAD 660 FGSGRVDIMN QDQWYEHLHR KAMQVVEQGM RSKEHCRVAW EALKEGRNRV QFVTEKPS*

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence Send to blast

MVEIGNSVYS PSDQSLSPHP HLCITMEEEG SEQVVVEDDL PIEDDDPDLG IDLDDDCDGL  60
LQIAANNTLE TETGIGCDAP PTRPAPAPGM EFESYDDAYS YYNSYARELG FAIRVKSSWT  120
KRNSKEKRGA VLCCNCQGFK MVKEANSRRK ETRTGCQAMI RLRLIDSDRW KVDQVKLDHN  180
HSFDPQRAHN SKSHKKNKSS SSASASASAS SYSNTQPQPP PLHVQVRTIK LYRVVDTPPP  240
HGSSTSAGHP FHSSRPLDLP GGGFRHLQDF FFHFQLTNPN FLYLMDLTDD GSLRTVFWID  300
ARARAAYSHF GDVVFFDTTC LSNSYKLPLI AFVGIDHHGD SILLGCALLP DQSFDTYLWL  360
FRAWLTCMLG RPPQTFITQQ CKAMRTAVSQ VFPRAHHRLS LTHVLHNIFQ SVVQLQQDSD  420
LFRMVLNRVV YGCLKVEEFE TAWEEMIIRF GLTDHETIRY VFQDREQWAP VYLKDTFLAG  480
ALTFPLGDVA APFIFSGYVH ENTSLREFLE GYESFLDGKY TRQALCDSES SKFIPELKTT  540
HPYESQMANV FTVEIFRRFQ DEVSAMSSCF GITQVHSNGS ASSYVVKERE GEKVRDFEVI  600
YETSAEAQVR CFCVCGGFSF NGYQCRHVLL VLSHNGLQEV PPQYILRRWR KDVKRLYVAD  660
FGSGRVDIMN QDQWYEHLHR KAMQVVEQGM RSKEHCRVAW EALKEGRNRV QFVTEKPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10019873m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC009322	0.0	AC009322.1 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence.
GenBank	AC011717	0.0	AC011717.6 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300794.1	0.0	protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	R0GD24	0.0	R0GD24_9BRAS; Uncharacterized protein
STRING	XP_006300794.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Carubv10019873m
Entrez Gene	17895769

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]