PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017787m | ||||||||
Common Name | CARUB_v10017787mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 283aa MW: 32371.3 Da PI: 9.4502 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.5 | 1.2e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a++ifs++gklye++s Carubv10017787m 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 87.5 | 2.7e-29 | 82 | 174 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++++ + +q++ kLk+++enLq++qRhllGe+L ++ ++eL+qLe+q++ sl++iRs+K + +l+q+++l+ ke++l e+n++Lrkklee Carubv10017787m 82 NQSAKDLQDKYQDYLKLKSRVENLQHSQRHLLGEELAEMGVNELEQLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRKKLEE 174 36788999**********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.137 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.00E-43 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.88E-32 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-24 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.873 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS 60 PSGMAKTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS RVENLQHSQR HLLGEELAEM 120 GVNELEQLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRK KLEESDAALT 180 QSVWGASAAE HSQQLQQQQQ LQQQQQQQQQ QQQQQQQQQQ QGMSSYQPNP PIQEAGFFKP 240 LQGNVALQMS SHYNHNHAAM TNANNSATTS QNVNGFFPGW MV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 4e-22 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 4e-22 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 4e-22 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 4e-22 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00030 | SELEX | Transfer from AT2G03710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017787m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU81369 | 0.0 | U81369.1 Arabidopsis thaliana MADS box protein (AGL3) mRNA, complete cds. | |||
GenBank | AY063894 | 0.0 | AY063894.1 Arabidopsis thaliana putative MADS-box protein AGL3 (At2g03710) mRNA, complete cds. | |||
GenBank | AY096386 | 0.0 | AY096386.1 Arabidopsis thaliana putative MADS-box protein (AGL3) (At2g03710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291635.1 | 0.0 | agamous-like MADS-box protein AGL3 isoform X1 | ||||
Swissprot | P29383 | 1e-171 | AGL3_ARATH; Agamous-like MADS-box protein AGL3 | ||||
TrEMBL | R0HKZ0 | 0.0 | R0HKZ0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006291635.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7135 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.1 | 1e-156 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017787m |
Entrez Gene | 17886400 |
Publications ? help Back to Top | |||
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