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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10013729m | ||||||||
Common Name | CARUB_v10013729mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 439aa MW: 47240.6 Da PI: 10.1708 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.6 | 2.3e-12 | 359 | 410 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N +L+ + e+ ++ Carubv10013729m 359 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKTNLELQRKQAEMMEMQ 410 69************************************99987666665553 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-8 | 355 | 421 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.438 | 357 | 408 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.84E-10 | 359 | 408 | No hit | No description |
CDD | cd14707 | 2.57E-24 | 359 | 411 | No hit | No description |
Pfam | PF00170 | 4.7E-10 | 359 | 416 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.5E-12 | 359 | 409 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 362 | 377 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MGTHINFSNL GGGSTSGGEG SNQMKPAGNV MPLARQSSVY SLTFDELQST LGGPGKDFGS 60 MNMDELLKSI WTAEESQAIA MTSSSSTAAA VAQPTAGIPV GNLQRQGSLT LPRTISQKTV 120 DEVWKCLVTK DSNDNMGSSS GGGGESNAPP GRQQTLGEMT LEEFLFRAGV VREDNSAQQM 180 GQVNGNNNDG FYGNNTAAGG LGFGFGQPNQ NSISFNGNND SMILNQPPGL GLKVGGPIQQ 240 QQQQQHQVQQ QQLLQQQQQQ QLQQLNHPHP QQRLPQTIFP KQANVALSAP VSIVNKGFAG 300 AANNSVSNNN GLASFGTGVT VAATSPGTSS AENNSLSPVP YVLNRGRRSN TGLEKVIERR 360 QRRMIKNRES AARSRARKQA YTLELEAEIE KLKKTNLELQ RKQAEMMEMQ KNEQLKESSK 420 QPWGSKRQCL RRTLTGPW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10013729m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB017161 | 0.0 | AB017161.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 2 (AREB2), complete cds. | |||
GenBank | AF093547 | 0.0 | AF093547.1 Arabidopsis thaliana clone 19 abscisic acid responsive elements-binding factor (ABRE) mRNA, partial cds. | |||
GenBank | AY050897 | 0.0 | AY050897.1 Arabidopsis thaliana putative abscisic acid responsive elements-binding factor (At3g19290) mRNA, complete cds. | |||
GenBank | AY091298 | 0.0 | AY091298.1 Arabidopsis thaliana putative abscisic acid responsive elements-binding factor (At3g19290) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297700.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1 | ||||
Refseq | XP_023641141.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1 | ||||
Refseq | XP_023641142.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1 | ||||
Swissprot | Q9M7Q2 | 0.0 | AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
TrEMBL | R0I2N4 | 0.0 | R0I2N4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297700.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19290.3 | 1e-177 | ABRE binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10013729m |
Entrez Gene | 17892288 |
Publications ? help Back to Top | |||
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