PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012878m
Common NameCARUB_v10012879mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 1050aa    MW: 117377 Da    PI: 9.7831
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012878mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-074476336
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
                      WT  E e+++da +++G + Wk++a+ + + R+
  Carubv10012878m 44 QWTRVELERFYDAYRKHGHE-WKKVAAAVRNSRS 76
                     6*******************.*****99886666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.81E-64390IPR009057Homeodomain-like
PfamPF002491.3E-54481IPR001005SANT/Myb domain
SMARTSM011352.5E-60641742IPR033471DIRP domain
PfamPF065843.9E-32641741IPR033471DIRP domain
SMARTSM003330.0014728785IPR002999Tudor domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    Send to blast
MAPVRKSRSV NKRFTNESSP GKDAGSSRKN KQRKKKLSDK LGPQWTRVEL ERFYDAYRKH  60
GHEWKKVAAA VRNSRSIDMV EALFNMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSGSE  120
GEGHDASEVP RKQQKRKRAK PQLSDSREEV DIKHGVASTD GCLTFLKQAR ANGTQRHATG  180
KRTPRVPVQN SYMRDDRECF TPPNKRARKQ FDANDDVAHF LALALTDASR RGGSSKVSES  240
PNRRTELNAS SPIKSWGNMS RTRKSQSKHC DNSVFEEWVG SSQERKLESD KDTALLGDME  300
GVSELEAARK GKRFYKKRVK VEVEEAEGNV SDDNGEACSA TEGLRIKSQR RKAAMEASRG  360
KYLSHSAKKR DNKLTSGDEF DALQALAELS ASMIPATLME SESSARLKEE RTEYNMDERS  420
STPEATPSSS NGEKANAEPD DDSLLHAISS GENANKRKPK PSRQASTDCD VVPTGKLQPQ  480
TSGSLRRKRI PKVLGDEAPA DVSQKKITNK KELSQDENNM KSLVRTKRVG QGPAQSKQLK  540
TAKTLDEFTT TSDKNRPEMD VVASTKQVSD SCPASVSQKP PNKRKKSLKK SLQERAKSSE  600
TIHKASRSSR SLSEQELLLK DKMSTALSYP LARRRCIFEW FYSAIDHPWF AKMEFVDYLN  660
HVGLGHIPRL TRLEWSVIKS SLGRPRRFSE RFLQEEREKL KQYRESVRKH YTELRTGARE  720
GLPTDLARPL SVGNRVIAIH PKTREIHDGK ILTVDHNKCN VLFDDLGVEL VMDIDCMPLN  780
PLEYMPEGLR RQIDKCLSMK KEAQLSGNSN IGVSVIFPPC GLENVSFSMN PPLNQGDIIA  840
PILHGKVSTN TSSPQQTNHS YITTYNKARE AEIQRALALQ HASDEKEMEP EMLEIVKGSK  900
TRAQAMVDAA IKAASSVKEG EDANKMIQEA LDLIGKHQPL RGFRFKHHEH VNGNIEHHQN  960
PSPSDTSETM ANNDFNSQDG SDLITSCVAT WLMIQMCTER QYPPADVAQL IDAAITSLQP  1020
RCPQNLPIYR EIQTCMGQIK TQILALVPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133140QKRKRAKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012878m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5834960.0AJ583496.1 Arabidopsis thaliana mRNA for Arabidopsis always early 2 protein (Ataly2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296886.10.0protein ALWAYS EARLY 2 isoform X1
RefseqXP_006296887.10.0protein ALWAYS EARLY 2 isoform X1
SwissprotQ6A3330.0ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBLR0HJB20.0R0HJB2_9BRAS; Uncharacterized protein
STRINGXP_006296886.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29622241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-143DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]