PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10012336m

Common Name

CARUB_v10012336mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Trihelix

Protein Properties

Length: 404aa MW: 44343.7 Da PI: 9.2989

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10012336m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56	1e-17	19	109	2	73
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e++ Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r + Carubv10012336m 19 WTLNETMILIEAKKMDDERRMRRSiglpppeqqqdsrssssnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 109 ************666655555445555555556666666558899**************************************9843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.725	11	94	IPR017877	Myb-like domain
Pfam	PF13837	3.3E-13	18	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MADQSGGLVM MREYRKGNWT LNETMILIEA KKMDDERRMR RSIGLPPPEQ QQDSRSSSSN 60 KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFSAAAGESS 120 SSSAAAGGET APSYWKMEKS ERKERNLPSN MLPQTYQALF EVVESKTSLP SSTAVTAAVA 180 AAAAAIGSGN GSGGGQLQKV LQQGLGFVVP KVHQIIQPPP VVVSLPPPPS QPHPPPQPLP 240 PRPLLLPPPP PPSFHAQQIL PTGNSSSDSD TSEYSDTSPA KRRRTMPTTT AGPSGGGSVE 300 AEEEEARRSK RDEETTVAVA LSRSVTMIAN AIRESEERQD RRHKEVMSVQ ERRLKIEESN 360 VEMNREGMNG LVEAINKLAS SIFALASSSS SGRHSNQHQG GPP*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MADQSGGLVM MREYRKGNWT LNETMILIEA KKMDDERRMR RSIGLPPPEQ QQDSRSSSSN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFSAAAGESS  120
SSSAAAGGET APSYWKMEKS ERKERNLPSN MLPQTYQALF EVVESKTSLP SSTAVTAAVA  180
AAAAAIGSGN GSGGGQLQKV LQQGLGFVVP KVHQIIQPPP VVVSLPPPPS QPHPPPQPLP  240
PRPLLLPPPP PPSFHAQQIL PTGNSSSDSD TSEYSDTSPA KRRRTMPTTT AGPSGGGSVE  300
AEEEEARRSK RDEETTVAVA LSRSVTMIAN AIRESEERQD RRHKEVMSVQ ERRLKIEESN  360
VEMNREGMNG LVEAINKLAS SIFALASSSS SGRHSNQHQG GPP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10012336m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306413.1	0.0	uncharacterized protein LOC17897741 isoform X2
TrEMBL	R0GU31	0.0	R0GU31_9BRAS; Uncharacterized protein
STRING	XP_006306413.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	1e-112	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Carubv10012336m
Entrez Gene	17897741