PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10009087m | ||||||||
Common Name | CARUB_v10009087mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 458aa MW: 51364.9 Da PI: 4.7063 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.6 | 1.1e-31 | 58 | 192 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....s 80 lp+G++F+P+d e++++ L+k+ ++g + ++ e+i++v+ i++++P++Lp vk++ + +fF+k+ k+y+tg+rk+r+++ + Carubv10009087m 58 LPRGVKFDPSDPEIIWHLLAKSgLSGLSshpfID--EFIPTVNqddgICYTHPKNLP-GVKNDGTVSHFFHKAIKAYSTGTRKRRKIHdddlgD 148 799************9999988444444644422..33444433345**********.778888999******************865556558 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +W++tg++k+v+ +g + g+kk++v+y g+a kt+Wvmh+y+l Carubv10009087m 149 VRWHKTGRTKPVVL-DGVQRGCKKIMVLYGGKAV---KTNWVMHQYHL 192 99************.99************76665...6********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-37 | 43 | 211 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.155 | 58 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-12 | 59 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MAGRSWLIDS NRIATKIMSA SAGSDPRQVV WKSNPTRHCP NCRHVIDNSD VVDDWPGLPR 60 GVKFDPSDPE IIWHLLAKSG LSGLSSHPFI DEFIPTVNQD DGICYTHPKN LPGVKNDGTV 120 SHFFHKAIKA YSTGTRKRRK IHDDDLGDVR WHKTGRTKPV VLDGVQRGCK KIMVLYGGKA 180 VKTNWVMHQY HLGIEEDEKE GDYVVSKIFY QQPQQQVVKQ GDKAEQEVSE EIFAATTPKA 240 DPVTPKLATP EPRHAVRLCS ASHIANDYVT PHSYVTAPEV SLAETSEVMY MEDEVQSIQP 300 NHERPSSADE PEPDPEPEHG LENGAKEIID DKEEQDRDRD DEHQAEEEPT WFDSGSQFIL 360 NSQQLVEALS LCDDLLQVGS QDREENTNSG SLKNKQPCFA DYAHLGTEDF KRDLEECQKI 420 VLDPSNIELD TPPEFRLSQL EFGSQDSFLA WGTGKTD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10009087m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221266 | 0.0 | AK221266.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-13-I20. | |||
GenBank | AK228316 | 0.0 | AK228316.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-M01. | |||
GenBank | BT010450 | 0.0 | BT010450.1 Arabidopsis thaliana At1g25580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307460.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | R0ISL5 | 0.0 | R0ISL5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006307460.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10009087m |
Entrez Gene | 17900462 |