PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10004090m

Common Name

CARUB_v10004090mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

CAMTA

Protein Properties

Length: 923aa MW: 104736 Da PI: 7.4951

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10004090m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162.5	7.8e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 +e +rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf Carubv10004090m 30 DEaYTRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGNDNPTFV 123 45589*************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL++++e+ivlvhy+e++ Carubv10004090m 124 RRCYWLLDKSQEHIVLVHYRETH 146 ******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.405	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.1E-73	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.3E-45	32	144	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.4E-4	361	460	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	5.18E-14	373	460	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.39E-13	559	669	No hit	No description
Pfam	PF12796	9.7E-7	560	639	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.5E-15	560	672	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.02E-15	568	679	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.292	577	672	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.7E-6	610	639	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.808	610	642	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	6.595	759	785	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	260	774	796	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.5E-4	797	819	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.237	798	822	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.2E-4	800	819	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	6.8	873	895	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.37	874	903	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.22	875	895	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MAGVDSGKLI GSEIHGFHTL QDLDIQTMLD EAYTRWLRPN EIHALLCNHK FFTINVKPVN 60 LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGNDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEAQA APATPGNSYS SSISDHLSPK LVAEDINSVV 180 RNTCNTGFEV RSNSLGARNH EIRLHEINTL DWDELLVPAD ISNHSHPTEE DMLYFTEQLE 240 TAPRGSAKQG NHLAGYNGSV DIPSFPGLED PVYQNNNSCG AGEFSSQHVH CGVESILQRR 300 NSNATVADQP GDALLNNGYG SQDSFGRWVN NFISDSPGSV DDPSLEAVYT PGQESSTTAV 360 SHSHSNVPEQ VFNITDVSPA WAYSTEKTKI LVTGFFHDSF QHFGRSNLFC ICGELRVPAE 420 FLQLGVYRCF LPPQSPGVVN LYLSVDGNKP VSQLFSFEYR SVPVIEKAIP QDDQLHKWEE 480 FEFQVRLAHL LFTSSNKISV LTSKISPDNL LEAKKLASRT SHLLNSWAYL MKSIQANEVP 540 FDQARDHLFE LTLKNRLKEW LLEKVIENRN TKEYDSKGLG VIHLCAVLGY TWSILLFSWA 600 NISLDFRDKH GWTALHWAAY YGREKMVAAL LSAGARPNLV TDPTKEFLGG CTPADLAQQK 660 GYDGLAAFLA EKCLVAQFKD MQVAGNISGN LETIKAEQSS NPGNANEEEQ SLKDTLAAYR 720 TAAEAAARIQ GAFREHELKV RSSAVRFASK EEEAKNIIAA MKIQHAFRNF ETRRKIAAAA 780 RIQYRFQTWK MRREFLNMRN KAIRIQAAFR GYQVRRQYQK ITWSVGVLEK AILRWRLKRK 840 GFRGLQVSQP EKKEGDEEVE DFYKTSQKQA EDRLERSVVK VQAMFRSKKA QQDYRRMKLA 900 HEEAQLEYDG MQELDQMAME ES*

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MAGVDSGKLI GSEIHGFHTL QDLDIQTMLD EAYTRWLRPN EIHALLCNHK FFTINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGNDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEAQA APATPGNSYS SSISDHLSPK LVAEDINSVV  180
RNTCNTGFEV RSNSLGARNH EIRLHEINTL DWDELLVPAD ISNHSHPTEE DMLYFTEQLE  240
TAPRGSAKQG NHLAGYNGSV DIPSFPGLED PVYQNNNSCG AGEFSSQHVH CGVESILQRR  300
NSNATVADQP GDALLNNGYG SQDSFGRWVN NFISDSPGSV DDPSLEAVYT PGQESSTTAV  360
SHSHSNVPEQ VFNITDVSPA WAYSTEKTKI LVTGFFHDSF QHFGRSNLFC ICGELRVPAE  420
FLQLGVYRCF LPPQSPGVVN LYLSVDGNKP VSQLFSFEYR SVPVIEKAIP QDDQLHKWEE  480
FEFQVRLAHL LFTSSNKISV LTSKISPDNL LEAKKLASRT SHLLNSWAYL MKSIQANEVP  540
FDQARDHLFE LTLKNRLKEW LLEKVIENRN TKEYDSKGLG VIHLCAVLGY TWSILLFSWA  600
NISLDFRDKH GWTALHWAAY YGREKMVAAL LSAGARPNLV TDPTKEFLGG CTPADLAQQK  660
GYDGLAAFLA EKCLVAQFKD MQVAGNISGN LETIKAEQSS NPGNANEEEQ SLKDTLAAYR  720
TAAEAAARIQ GAFREHELKV RSSAVRFASK EEEAKNIIAA MKIQHAFRNF ETRRKIAAAA  780
RIQYRFQTWK MRREFLNMRN KAIRIQAAFR GYQVRRQYQK ITWSVGVLEK AILRWRLKRK  840
GFRGLQVSQP EKKEGDEEVE DFYKTSQKQA EDRLERSVVK VQAMFRSKKA QQDYRRMKLA  900
HEEAQLEYDG MQELDQMAME ES*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10004090m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282550.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	R0GWD2	0.0	R0GWD2_9BRAS; Uncharacterized protein
STRING	XP_006282550.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Carubv10004090m
Entrez Gene	17880704

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]