PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10000150m

Common Name

CARUB_v10000150mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 972aa MW: 108004 Da PI: 8.4056

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10000150m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.8e-07	44	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+ E e+++da +++ g+ Wk++a+ + ++R+ +++ Carubv10000150m 44 QWTKGELERFYDAYRKHVGD-WKKVAAVVRNNRSVEMV 80 6***************99.*******99998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.55E-5	43	88	IPR009057	Homeodomain-like
CDD	cd00167	0.00155	45	80	No hit	No description
SMART	SM01135	4.2E-48	559	660	IPR033471	DIRP domain
Pfam	PF06584	8.4E-29	559	659	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MAPSKKLKSV NKRFTTEASS DINVGSSSKT NQRKKKLTDK LGPQWTKGEL ERFYDAYRKH 60 VGDWKKVAAV VRNNRSVEMV EALFSMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSESE 120 GEDHDASGVL TKHQKRKRAK VQAIDFQEEA IPPHSVASTE GCLSLLKQTQ AFEKRQRATG 180 KRTPRFLVAI TYEGGGREDS TPSNKRAKKQ LDPVDDASRR GGGGSPYKRT ELSGSTPVRL 240 GKRLQAQEAQ SKHPDSCMFE NRVRISRDKR HKKGPADIDD ALLMDMVPQK GKTVRVEEAE 300 GIDDDDDYAI QGLNALADLS ASLAPSGLIE SESSARREEE RIANNVGEKS STLETVFTSH 360 HREKAKQVGP EDGLLHEVSA ADKRKPKPVQ EPVDGNAVSV GDLGTSKRKR KPKFQVLDVE 420 VSEESIQTKS LFTKESAEDD NLKTLVKARP ASEGPANQLK AAKTSEESSL TSDKNITGPD 480 AVVSASQGSA DPVAFPQKRP DKRKMSLKKS LQQRAISSET THDKTRSFEK LSEHELLQEK 540 VSTCLSYPLV RRWCIFEWFY SAIDYPWFAK TEFTDYLNHV GLGHVPRLTR LEWSVIKSSL 600 GRPRRFSGRF LQDERDKLQQ YRESVRRHYT ELRGCAREVL HTDLARPLSV GNRVIAIHPK 660 TREICDGKIL TVDHDKCNVL FDELGVELVM DIDCMPLNPL EYMPEGLRKK IDKCLSISKE 720 AQLNRHSNSD ASLLFSPPVL ENVKFSKNSP AKQDDISEPV LYNQELATNT SDQSVKTNSQ 780 TRGTEIQRPL TLQRTSDEQE MEPEIIEIVS GSKSIAQEMV DAAMKAALSE KNNNSNEDSG 840 NMVQQALSSN GKHQPLDNSL VSGIKHQQHT NGSLDHHPSN TAEPSNGIIS QDGSGKKKTP 900 MPSELITSCV ATCLMIKMCT EKQYPPADVA QLMETAVSGL QPRCPQNMPI YREIETCMGL 960 IKTQIMALVR T*

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MAPSKKLKSV NKRFTTEASS DINVGSSSKT NQRKKKLTDK LGPQWTKGEL ERFYDAYRKH  60
VGDWKKVAAV VRNNRSVEMV EALFSMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSESE  120
GEDHDASGVL TKHQKRKRAK VQAIDFQEEA IPPHSVASTE GCLSLLKQTQ AFEKRQRATG  180
KRTPRFLVAI TYEGGGREDS TPSNKRAKKQ LDPVDDASRR GGGGSPYKRT ELSGSTPVRL  240
GKRLQAQEAQ SKHPDSCMFE NRVRISRDKR HKKGPADIDD ALLMDMVPQK GKTVRVEEAE  300
GIDDDDDYAI QGLNALADLS ASLAPSGLIE SESSARREEE RIANNVGEKS STLETVFTSH  360
HREKAKQVGP EDGLLHEVSA ADKRKPKPVQ EPVDGNAVSV GDLGTSKRKR KPKFQVLDVE  420
VSEESIQTKS LFTKESAEDD NLKTLVKARP ASEGPANQLK AAKTSEESSL TSDKNITGPD  480
AVVSASQGSA DPVAFPQKRP DKRKMSLKKS LQQRAISSET THDKTRSFEK LSEHELLQEK  540
VSTCLSYPLV RRWCIFEWFY SAIDYPWFAK TEFTDYLNHV GLGHVPRLTR LEWSVIKSSL  600
GRPRRFSGRF LQDERDKLQQ YRESVRRHYT ELRGCAREVL HTDLARPLSV GNRVIAIHPK  660
TREICDGKIL TVDHDKCNVL FDELGVELVM DIDCMPLNPL EYMPEGLRKK IDKCLSISKE  720
AQLNRHSNSD ASLLFSPPVL ENVKFSKNSP AKQDDISEPV LYNQELATNT SDQSVKTNSQ  780
TRGTEIQRPL TLQRTSDEQE MEPEIIEIVS GSKSIAQEMV DAAMKAALSE KNNNSNEDSG  840
NMVQQALSSN GKHQPLDNSL VSGIKHQQHT NGSLDHHPSN TAEPSNGIIS QDGSGKKKTP  900
MPSELITSCV ATCLMIKMCT EKQYPPADVA QLMETAVSGL QPRCPQNMPI YREIETCMGL  960
IKTQIMALVR T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	497	504	KRPDKRKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10000150m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006287004.1	0.0	protein ALWAYS EARLY 1 isoform X1
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	R0FCS2	0.0	R0FCS2_9BRAS; Uncharacterized protein
STRING	XP_006287004.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-73	DNA binding

Link Out ? help Back to Top
Phytozome	Carubv10000150m
Entrez Gene	17882965

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]