PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.7053s0020.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 31128 Da PI: 4.1514 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.9e-17 | 12 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +gy+GVr++ +g+WvAeIr+p g r r +lg+f + eAa a+++a+++++g Cagra.7053s0020.3.p 12 CGYRGVRQRI-WGKWVAEIREP---G-RgNRLWLGTFSSSHEAALAYDEAARAMYG 62 79*****998.**********8...4.359***********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.62E-32 | 12 | 71 | No hit | No description |
Pfam | PF00847 | 1.2E-12 | 12 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-35 | 13 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-19 | 13 | 71 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.153 | 13 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-29 | 14 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-9 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-9 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MRGKGGPENG ICGYRGVRQR IWGKWVAEIR EPGRGNRLWL GTFSSSHEAA LAYDEAARAM 60 YGQSARLNLP DYTNGSSSTA ATVSGSVTAF SDESEICARQ DTNVRFGFSH VKLEDSSDEY 120 VTLDSSQCMK EKLNVKEEER ELNSVNAFGI GQESKKEILD DWVMGNGNDQ EPLVFGMDET 180 FDINELLGIL DDNNASGQDT MQGQVDRQPN FSYQMQFPDA NLLGSLNPME IANPGIDYGY 240 PYTQPSEMEN NGIGSDHRRF EDLDIQDLDF GGGKDIHDST T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-17 | 14 | 70 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.7053s0020.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254595 | 0.0 | AC254595.1 Capsella rubella clone CAP16-M18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294523.1 | 0.0 | dehydration-responsive element-binding protein 2C isoform X2 | ||||
Refseq | XP_023640878.1 | 0.0 | dehydration-responsive element-binding protein 2C isoform X3 | ||||
Refseq | XP_023640879.1 | 0.0 | dehydration-responsive element-binding protein 2C isoform X3 | ||||
Swissprot | Q8LFR2 | 1e-158 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | R0FXH6 | 0.0 | R0FXH6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.7053s0020.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 1e-140 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.7053s0020.3.p |
Publications ? help Back to Top | |||
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