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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.4962s0003.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
SRS |
Protein Properties |
Length: 328aa MW: 36576.4 Da PI: 9.8477 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.4962s0003.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 22.6 | 2.9e-07 | 28 | 96 | 5 | 72 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaas 72
+ +C +CGn a+ C ++ C+ CC + C hv v aa e++q+ +++ss+++as+ ++ +
Cagra.4962s0003.1.p 28 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLK--V-AATPGEKMQAPSTPSSDQKASEgtpgTTTRV 96
568*******************************964..3.3444455555555544444444233322222 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MATSSPSLSN NGLSAVVTPP KTLRGLNKPK CIQCGNVARS RCPFQSCKGC CSRAENPCPI 60 HVLKVAATPG EKMQAPSTPS SDQKASEGTP GTTTRVSSIR QLSSNFAQFN NLNASSRQRK 120 PLTIKDAQAL NEWRFTKLKE YRDRNIEVEN EAFDRYMSNV NLLEEAISFT SVPDEEVPRA 180 AASERNNEEK NIPELKLRLR TSSARTEKFK KQITETIKAG LFKLQRTEYG GSSDDEDEKK 240 RRTKRKKWQD KGSALNEIVD KLNKARTEED LKSCLEMKSK LCSHVTSPAA SEKNKVFPAQ 300 VRKVEMSEEA LQKISENLQS FDNVVTL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB493492 | 0.0 | AB493492.1 Arabidopsis thaliana At1g32730 mRNA for hypothetical protein, partial cds, clone: RAAt1g32730. |
GenBank | AY084750 | 0.0 | AY084750.1 Arabidopsis thaliana clone 116730 mRNA, complete sequence. |