PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4962s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SRS
Protein Properties Length: 328aa    MW: 36576.4 Da    PI: 9.8477
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4962s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70222.62.9e-072896572
               DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaas 72
                         + +C +CGn a+  C ++ C+ CC   +  C  hv    v aa   e++q+ +++ss+++as+    ++ + 
  Cagra.4962s0003.1.p 28 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLK--V-AATPGEKMQAPSTPSSDQKASEgtpgTTTRV 96
                         568*******************************964..3.3444455555555544444444233322222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.1E-630103IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MATSSPSLSN NGLSAVVTPP KTLRGLNKPK CIQCGNVARS RCPFQSCKGC CSRAENPCPI  60
HVLKVAATPG EKMQAPSTPS SDQKASEGTP GTTTRVSSIR QLSSNFAQFN NLNASSRQRK  120
PLTIKDAQAL NEWRFTKLKE YRDRNIEVEN EAFDRYMSNV NLLEEAISFT SVPDEEVPRA  180
AASERNNEEK NIPELKLRLR TSSARTEKFK KQITETIKAG LFKLQRTEYG GSSDDEDEKK  240
RRTKRKKWQD KGSALNEIVD KLNKARTEED LKSCLEMKSK LCSHVTSPAA SEKNKVFPAQ  300
VRKVEMSEEA LQKISENLQS FDNVVTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243KKRRTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4962s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934920.0AB493492.1 Arabidopsis thaliana At1g32730 mRNA for hypothetical protein, partial cds, clone: RAAt1g32730.
GenBankAY0847500.0AY084750.1 Arabidopsis thaliana clone 116730 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305346.10.0uncharacterized protein LOC17897965
TrEMBLR0I7D50.0R0I7D5_9BRAS; Uncharacterized protein
STRINGCagra.4962s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73621317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.10.0