PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.4290s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | AP2 | ||||||||
Protein Properties | Length: 563aa MW: 62320.3 Da PI: 7.2412 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.9 | 4.5e-12 | 292 | 348 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g rk + g ++ +e+Aa+a++ a++k++g Cagra.4290s0005.1.p 292 SQYRGVTRHRWTGRYEAHLWDnSFKkEGhSRKGRQ-GGYDMEEKAARAYDLAALKYWG 348 78*******************43334555446666.77******************98 PP | |||||||
2 | AP2 | 51 | 3.6e-16 | 391 | 442 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g Cagra.4290s0005.1.p 391 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDVAAIKFRG 442 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.24E-18 | 292 | 355 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-14 | 292 | 358 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-9 | 292 | 348 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.99 | 293 | 356 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-12 | 293 | 356 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-20 | 293 | 362 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 294 | 305 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.01E-26 | 391 | 452 | No hit | No description |
Pfam | PF00847 | 1.7E-11 | 391 | 442 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 391 | 451 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.966 | 392 | 450 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-18 | 392 | 450 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-34 | 392 | 456 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 432 | 452 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MKSFCDNDDN NHSNTTNLLG FSLSSNMMKM GGGRGGGEAI YSSTTSSAAT SSSSVPPQLV 60 VGDNSNNNNY AVCYGSNNST GEIYSHMSVM PLRSDGSLCL MEALNRSSHS TNHQDASPKM 120 EDFFGTHQSN TSHKEAMDLS LDSLFYNTTH HEPNTATNFQ EFFSFPQTRN HHEEESRNYE 180 NDPGLTHGGS FNVGVYGEFQ QSLSLSMSPG SQSSCITGSH HQNHQTQNQH HQNHQSQNHH 240 QISEALVETS VGFETTTMAA AKKKRGQDEV VVVGQKQIVH RKSIDTFGQR TSQYRGVTRH 300 RWTGRYEAHL WDNSFKKEGH SRKGRQGGYD MEEKAARAYD LAALKYWGPS THTNFSVENY 360 QKEIDDMKNM TRQEYVAHLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL 420 GTFGTQEEAA EAYDVAAIKF RGTNAVTNFD ITRYDVERIM SSNTLLSGEL ARRNNNSIVV 480 CNNDDETALN AAVDGGSNKQ ASSPERVLNF PAIFALPQVG PKMFGANVVG NMNPWTSNPN 540 AELKTVALTL PQMPVFAAWA DS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.4290s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU40256 | 0.0 | U40256.1 Arabidopsis thaliana ovule development protein (AINTEGUMENTA) mRNA, complete cds. | |||
GenBank | ATU41339 | 0.0 | U41339.1 Arabidopsis thaliana ANT (AINTEGUMENTA) mRNA, complete cds. | |||
GenBank | AY080706 | 0.0 | AY080706.1 Arabidopsis thaliana putative ovule development protein aintegumenta (At4g37750) mRNA, complete cds. | |||
GenBank | AY117207 | 0.0 | AY117207.1 Arabidopsis thaliana putative ovule development protein aintegumenta (At4g37750) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023634644.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 0.0 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | R0GHP4 | 0.0 | R0GHP4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.4290s0005.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3137 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.4290s0005.1.p |