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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cagra.27949s0001.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
NAC |
Protein Properties |
Length: 346aa MW: 38026.8 Da PI: 8.114 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cagra.27949s0001.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 158.1 | 3.6e-49 | 1 | 122 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
FhPtdeelvv+yLk+k+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++
Cagra.27949s0001.1.p 1 FHPTDEELVVHYLKRKAASAPLPV-AIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLAS 88
9***********************.88***************999999***************************************99 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++vg+kk Lvfy+g+ pkg k+dW+mheyrl
Cagra.27949s0001.1.p 89 dGNQKVGVKKALVFYSGKPPKGIKSDWIMHEYRL 122
67788***************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0045995 | Biological Process | regulation of embryonic development |
GO:0048317 | Biological Process | seed morphogenesis |
GO:0080060 | Biological Process | integument development |
GO:0005634 | Cellular Component | nucleus |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 346 aa
Download sequence Send
to blast |
FHPTDEELVV HYLKRKAASA PLPVAIIAEV DLYKFDPWEL PAKASFGEQE WYFFSPRDRK 60 YPNGARPNRA ATSGYWKATG TDKPVLASDG NQKVGVKKAL VFYSGKPPKG IKSDWIMHEY 120 RLIENKLNNR PPGCDFGNKK NSLRLDDWVL CRIYKKNNAG RHVDNDKDHD MIDYIFRKIP 180 PSLSMAATAT GLHHHHHNVS RSMNFFPGKF SGGGYGIFSD GNTSLYDGGG MINNMGTDSV 240 DHDNNSEVVG LNHASSSGPM MMASLKRALP VPYWPVAEEE QDASPSKRFH GGGGGGDCSN 300 MSSTMMEETP PILMQQQGGG GGGVLGDGLF RTTPYQLPGL NWYPS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-68 | 1 | 161 | 23 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-68 | 1 | 161 | 23 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-68 | 1 | 161 | 23 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-68 | 1 | 161 | 23 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-68 | 1 | 161 | 26 | 173 | NAC domain-containing protein 19 |
3swm_B | 5e-68 | 1 | 161 | 26 | 173 | NAC domain-containing protein 19 |
3swm_C | 5e-68 | 1 | 161 | 26 | 173 | NAC domain-containing protein 19 |
3swm_D | 5e-68 | 1 | 161 | 26 | 173 | NAC domain-containing protein 19 |
3swp_A | 5e-68 | 1 | 161 | 26 | 173 | NAC domain-containing protein 19 |
3swp_B | 5e-68 | 1 | 161 | 26 | 173 | NAC domain-containing protein 19 |
3swp_C | 5e-68 | 1 | 161 | 26 | 173 | NAC domain-containing protein 19 |
3swp_D | 5e-68 | 1 | 161 | 26 | 173 | NAC domain-containing protein 19 |
4dul_A | 4e-68 | 1 | 161 | 23 | 170 | NAC domain-containing protein 19 |
4dul_B | 4e-68 | 1 | 161 | 23 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB049071 | 0.0 | AB049071.1 Arabidopsis thaliana AtNAC2 mRNA, complete cds. |
GenBank | BT004079 | 0.0 | BT004079.1 Arabidopsis thaliana clone RAFL15-22-L08 (R20756) putative jasmonic acid regulatory protein (At3g15510) mRNA, complete cds. |
GenBank | BT005044 | 0.0 | BT005044.1 Arabidopsis thaliana clone U20756 putative jasmonic acid regulatory protein (At3g15510) mRNA, complete cds. |