PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2007s0005.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 318aa MW: 36668 Da PI: 7.7403

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2007s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.5	6e-19	10	104	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 ffkv+ ++s+ lv+p f++ gk + +k+ l de gr W+v+++ + + +r ++++kGW+ F+k++ L+ gDf+vF++dg s Cagra.2007s0005.1.p 10 FFKVF--LPEFSSHELVIPPAFIDLLVGK-PLPKEAFLLDEIGRLWRVEIKTEDTEERfcVLFQKGWECFAKDQSLEFGDFLVFSYDGGS 96 88999..889999********766544.5999************88777777899************************989 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +f v++f Cagra.2007s0005.1.p 97 RF--SVTIFA 104 99..888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.803	8	106	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.75E-19	9	106	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.0E-20	9	106	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	6.3E-17	10	104	IPR003340	B3 DNA binding domain
SMART	SM01019	9.0E-22	10	106	IPR003340	B3 DNA binding domain
CDD	cd10017	1.71E-17	10	103	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.3E-13	200	296	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-14	200	288	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.502	204	302	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-7	207	302	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MVETGKDLEF FKVFLPEFSS HELVIPPAFI DLLVGKPLPK EAFLLDEIGR LWRVEIKTED 60 TEERFCVLFQ KGWECFAKDQ SLEFGDFLVF SYDGGSRFSV TIFAKDGTKK DVGVVATTER 120 SRVSLEKDPV HIFTKPERRK DCKRKREHDS VLDKPEYVST SKTKPGHREK IQRTTVNRAG 180 DPCDISWSSD SEDGFEETVY KPKNPHFLRN ITCSSFHKLE IPITFLRSNG IELEEEIELC 240 DEDGKKWPLK VENHVRGLRF SCETWSCFSK GHKLMKNHKF LLEFVASSGR CKEIQVRVVS 300 GRLPTTMTRN KYQILAM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2007s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023632897.1	0.0	putative B3 domain-containing protein At5g66980
Swissprot	Q9FGD2	1e-158	Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBL	R0GUD3	0.0	R0GUD3_9BRAS; Uncharacterized protein
STRING	Cagra.2007s0005.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12802	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	1e-148	B3 family protein

Link Out ? help Back to Top
Phytozome	Cagra.2007s0005.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]