PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1582s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 386aa    MW: 43223.6 Da    PI: 4.6979
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1582s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-20123172255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp++     r +lg+f+taeeAa+a++aa+++++g
  Cagra.1582s0005.1.p 123 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRG 172
                          69*******.**********954...39************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-32123181IPR001471AP2/ERF domain
CDDcd000181.59E-17123182No hitNo description
SuperFamilySSF541713.99E-22123180IPR016177DNA-binding domain
PROSITE profilePS5103224.54123180IPR001471AP2/ERF domain
SMARTSM003803.7E-38123186IPR001471AP2/ERF domain
PRINTSPR003673.3E-11124135IPR001471AP2/ERF domain
PfamPF008478.1E-13124172IPR001471AP2/ERF domain
PRINTSPR003673.3E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MCGGAIISDF IPPPRSRRVT SEFIWPDLKN KGKVSKKRST KRSDFFDLDE EFEADFQGFK  60
DESSFDCDDD VYANVKPFVF NATTKPVASP ASAFVSTGFT SAKKTVESDD QAEKSSKRKR  120
KNQYRGIRQR PWGKWAAEIR DPRKGSREWL GTFDTAEEAA RAYDAAARRI RGSKAKVNFP  180
EAKIPSISQK RPSVRTSNLQ KPVAKPNQSP TLVQQPTYLS QQYCNNSFDN MGHESFGDVS  240
FMEEKPQMYN NQFGVTNSFD AGGNNGYQYF SSDQGSNSFD CSEFGWSDHG PKTPEISSML  300
VNNNQAPFIE ETNAAKKLKP NSEDGINHND ESDDLMVYLD NALWDTPLEV EAMLGPDAGA  360
VTQEEENPMD LWSLDDINFM LEGDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22123180260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1582s0005.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297883.10.0ethylene-responsive transcription factor RAP2-2
SwissprotQ9LUM40.0RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2
TrEMBLR0G5V10.0R0G5V1_9BRAS; Uncharacterized protein
STRINGCagra.1582s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.30.0related to AP2 2
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  3. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  4. Yao Y, et al.
    ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1667-1681
    [PMID:28164334]
  5. Giuntoli B, et al.
    Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
    Plant Cell Environ., 2017. 40(10): p. 2333-2346
    [PMID:28741696]