PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.10917s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 427aa MW: 45338.8 Da PI: 9.9414 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.9 | 1.2e-14 | 348 | 403 | 5 | 60 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+ + ++ ++ ++ + Cagra.10917s0002.1.p 348 RRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDELQRKQAKIMEMQKNQE 403 79***************************************999888888876655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.0E-13 | 344 | 408 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.346 | 346 | 409 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.6E-14 | 348 | 398 | No hit | No description |
Pfam | PF00170 | 3.3E-12 | 348 | 404 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.52E-27 | 348 | 402 | No hit | No description |
SuperFamily | SSF57959 | 1.38E-10 | 348 | 397 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 351 | 366 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0010255 | Biological Process | glucose mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MDGNVSFKNN NLGNEPPGDG GVGGLTRPGL TRQGSIYSLT FDEFQSSLGK DFGSMNMDEL 60 LKNIWSAEET QAMASGMVPV TGGGQEGLQL QKQGSLTLPR TLSQMTVDQV WKDLSKVGSS 120 GGGGTNLSQA QAQAQNQSQS QRQQTLGEVT LEEFLVRAGV VREEAQIAAK AHIAENNKGG 180 YFGNEANTGF TVGFQQPSPR VVAAGVMGNL GVETANPLQV QGSSLPLNVN GARSTYQQPQ 240 QHQPIMPKQP GFGYGTQIGQ LSSPGIRGGG IMGLGDQSQM NNMGLVQGAA AAISGAVGVG 300 AVSPVTPLSS EGLGKSNGDC SSLSPSPYMF NGGARGRKSG TVEKVVERRQ RRMIKNRESA 360 ARSRARKQAY TVELEAEVAK LKEENDELQR KQAKIMEMQK NQEMELRNLV QGGPKKRLRR 420 TESGPW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00186 | DAP | Transfer from AT1G45249 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.10917s0002.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB017160 | 0.0 | AB017160.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 1 (AREB1), complete cds. | |||
GenBank | AF093545 | 0.0 | AF093545.1 Arabidopsis thaliana clone 2 abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds. | |||
GenBank | BT026443 | 0.0 | BT026443.1 Arabidopsis thaliana At1g45249 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307554.2 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1 | ||||
Refseq | XP_023632910.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1 | ||||
Swissprot | Q9M7Q4 | 0.0 | AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
TrEMBL | R0GWZ7 | 0.0 | R0GWZ7_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.10917s0002.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G45249.1 | 0.0 | abscisic acid responsive elements-binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.10917s0002.1.p |
Publications ? help Back to Top | |||
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